Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1398g00029 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGATTTATACCAGAGAGGCGAGCATTGCGTGTTCATGCAGCTCGTCCTAGTAATTCTAATTCACTCACTTTTCTCGTGACAGTCCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAATTTTCTGCTATGGCTGGTGCTCGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACGGAACTGAGGTTGCATATGCCACCATCGATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCTCTTCTTGACCGGGAGTTTGATGATCTTGATTATGAAACTTTAAGAGCTTTAGATTCAGATAATGTTTCTACGGCAGCTTCCATGACCGAGGAAGAGATAAATGCTCTTCCGGTCCACAAATATAAGGTTGCTGGTCCCCAGAGTGGTGGTTCATCAATGCAACAAGCATCATCATCCACTTCTGCTGAGAAGCAAGATAATTCAGGGGCTGTTGGGAGCATGAAAGCCTCTGACGATGAACTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGAAGTACTGCGTAGCTTACCTTGCTTGCATCAGTTTCACGCTAGTTGCATCGATCCTTGGCTGCGTCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGGTGGAGTGACAATGGACATAATGATATCGCGGACATGGTTTGA 819 0.4615 MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAASMTEEEINALPVHKYKVAGPQSGGSSMQQASSSTSAEKQDNSGAVGSMKASDDELTCSVCLEQVNVGEVLRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIADMV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1398g00029 272 MobiDBLite consensus disorder prediction 176 201 - -
Vium1398g00029 272 CDD RING-H2_PA-TM-RING 211 253 - -
Vium1398g00029 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 258 IPR013083 -
Vium1398g00029 272 MobiDBLite consensus disorder prediction 173 202 - -
Vium1398g00029 272 SMART ring_2 212 252 IPR001841 -
Vium1398g00029 272 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
Vium1398g00029 272 Pfam Ring finger domain 211 253 IPR001841 -
Vium1398g00029 272 SUPERFAMILY RING/U-box 207 256 - -
Vium1398g00029 272 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1398g00029 Vium-Chr1398 192431 196334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1398g00029 1 272 C3H Transcription Factor Family AT3G55530 78.909 1.18e-147 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1398g00029 K16283 - gmx:100777936 457.218