Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1398g00025 ATGATGTCTTCTGGGACATCCTCGTACTGGTGCTACCGGTGCAGCCGATTCGTCCGCGTTTTTCGCCAGGATGCCGTGGTCTGTCCCGACTGCGACGGCGGATTCATCGAAGAAATCGAACACCCGCCGCGCTCAGTCCACCTCGACCCTCGCCGTCGTCGCTTCCCTGCTGCCGCCATGTACATGATCGGCCAGCGCCCTGCCTCCGACAACGCTGCCCGTCCCTTCCTGCGCCGCACCCGCCGCAACGGTGGTGACCGCTCCCCCTTCAACCCCGTTATCGTCCTCCGCGGCAGCGCAGCTGCCACCTCCGCTACCAGCGAGGAGGAAAGTCGAGGCTTTGAGCTCTTCTACGACGATGGTGCCGGTTCTGGCCTGAGACCCTTGCCTCCGAGCATGTCAGAGTTTCTACTCGGATCTGGATTCGATAGGCTTCTGGAGCAACTGTCTCAGATTGAGATCAACGGTATTGGAAGGTATGAGCACCCTCCTGCGTCAAAAGCAGCCATAGATTCCTTACCAACCATCGAAATTGATAACACTCACTTAGCCATGGAATCACACTGTGCGGTGTGCAAAGAAGCTTTTGAATTAGGTACCGCGGTGAGGGAAATGCCGTGTAAGCATATATATCACCCTGAATGCATCTTACCATGGCTCGCTCTCCACAATTCTTGTCCTGTTTGTCGCCACGAGTTACCTGCGGATTCCTCAAACGCAAATTCAAATGCAAATTCAAATCCACCACAAAATGTTGGCTTGAACGAGGAAGAGAATGTGGGGTTGACGATTTGGAGGTTGCCCGGTGGAGGGTTTGCTGTTGGGAGATTTTCCGGTGGGAGAAGAGGTGCTGAGAGGGAGCTTCCTGTGGTTTATACTGAAATGGATGGAGGGTTTAACAATGGAGGTGAGCCTAGGAGGATTTCATGGTCTTCTAGAGGGAACAGAGGGAGAGAGAGTGGGGGATTGAACAGGTTTTTCCGCAATTTGTTTGGTTGCTTCAGAGGTGGGGTTGGAAGTAGTGGTTCTAGTACTACACAGCGTTCTGCTTCTAGTAGAGAGTCTATGAGAGCGAGTTCATCTCGTTCTAGTATGGATCCTTCTCCGCGATCGCGTAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCATGGTAG 1161 0.5332 MMSSGTSSYWCYRCSRFVRVFRQDAVVCPDCDGGFIEEIEHPPRSVHLDPRRRRFPAAAMYMIGQRPASDNAARPFLRRTRRNGGDRSPFNPVIVLRGSAAATSATSEEESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDNTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADSSNANSNANSNPPQNVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGLNRFFRNLFGCFRGGVGSSGSSTTQRSASSRESMRASSSRSSMDPSPRSRRTWSMDVNSGMRAW 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1398g00025 386 SMART ring_2 189 229 IPR001841 -
Vium1398g00025 386 FunFam E3 ubiquitin-protein ligase RING1-like 151 236 - -
Vium1398g00025 386 MobiDBLite consensus disorder prediction 338 378 - -
Vium1398g00025 386 Pfam Protein of unknown function (DUF1117) 260 365 IPR010543 -
Vium1398g00025 386 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Vium1398g00025 386 CDD RING-H2_RNF126-like 189 230 - -
Vium1398g00025 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Vium1398g00025 386 SUPERFAMILY RING/U-box 169 238 - -
Vium1398g00025 386 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Vium1398g00025 386 MobiDBLite consensus disorder prediction 302 321 - -
Vium1398g00025 386 Pfam Ring finger domain 188 230 IPR001841 -
Vium1398g00025 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 234 - -
Vium1398g00025 386 MobiDBLite consensus disorder prediction 338 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1398g00025 Vium-Chr1398 156155 158480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1398g00025 128 239 C3H Transcription Factor Family AT5G01980 41.071 4.82e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1398g00025 K11982 - gmx:100807324 630.557