Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1398g00024 ATGATGTCTTCTGGGACATCCTCGTACTGGTGCTACCGGTGCAGCCGATTCGTCCGCGTTTTTCGCCAGGATGCCGTGGTCTGTCCCGACTGCGACGGCGGATTCATCGAAGAAATCGAACACCCGCCGCGCTCAGTCCACCTCGACCCTCGCCGTCGTCGCTTCCCTGCTGCCGCCATGTACATGATCGGCCAGCGCCCTGCCTCCGACAACGCTGCCCGTCCCTTCCTGCGCCGCACCCGCCGCAACGGTGGTGACCGCTCCCCCTTCAACCCCGTTATCGTCCTCCGCGGCAGCGCAGCTGCCACCTCCGCTACCAGCGAGGAGGAAAGTCGAGGCTTTGAGCTCTTCTACGACGATGGTGCCGGTTCTGGCCTGAGACCCTTGCCTCCGAGCATGTCAGAGTTTCTACTCGGATCTGGATTCGATAGGCTTCTGGAGCAACTGTCTCAGATTGAGATCAACGGTATTGGAAGGTATGAGCACCCTCCTGCGTATGAGCACCCTCCTGCGTCAAAAGCAGCCATAGATTCCTTACCAACCATCGAAATTGATAACACTCACTTAGCCATGGAATCACACTGTGCGGTGTGCAAAGAAGCTTTTGAATTAGGTACCGCGGTGAGGGAAATGCCGTGTAAGCATATATATCACCCTGAATGCATCTTACCATGGCTCGCTCTCCACAATTCTTGTCCTGTTTGTCGCCACGAGTTACCTGCGGATTCCTCAAACGCAAATTCAAATGCAAATTCAAATCCACCACAAAATGTTGGCTTGAACGAGGAAGAGAATGTGGGGTTGACGATTTGGAGGTTGCCCGGTGGAGGGTTTGCTGTTGGGAGATTTTCCGGTGGGAGAAGAGGTGCTGAGAGGGAGCTTCCTGTGGTTTATACTGAAATGGATGGAGGGTTTAACAATGGAGGTGAGCCTAGGAGGATTTCATGGTCTTCTAGAGGGAACAGAGGGAGAGAGAGTGGGGGATTGAACAGGTTTTTCCGCAATTTGTTTGGTTGCTTCAGAGGTGGGGTTGGAAGTAGTGGTTCTAGTACTACACAGCGTTCTGCTTCTAGTAGAGAGTCTATGAGAGCGAGTTCATCTCGTTCTAGTATGGATCCTTCTCCGCGATCGCGTAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCATGGTAG 1179 0.5344 MMSSGTSSYWCYRCSRFVRVFRQDAVVCPDCDGGFIEEIEHPPRSVHLDPRRRRFPAAAMYMIGQRPASDNAARPFLRRTRRNGGDRSPFNPVIVLRGSAAATSATSEEESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPAYEHPPASKAAIDSLPTIEIDNTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADSSNANSNANSNPPQNVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGLNRFFRNLFGCFRGGVGSSGSSTTQRSASSRESMRASSSRSSMDPSPRSRRTWSMDVNSGMRAW 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1398g00024 392 CDD RING-H2_RNF126-like 195 236 - -
Vium1398g00024 392 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Vium1398g00024 392 MobiDBLite consensus disorder prediction 308 327 - -
Vium1398g00024 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 242 IPR013083 -
Vium1398g00024 392 MobiDBLite consensus disorder prediction 344 392 - -
Vium1398g00024 392 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Vium1398g00024 392 FunFam E3 ubiquitin-protein ligase RING1-like 159 242 - -
Vium1398g00024 392 Pfam Ring finger domain 194 236 IPR001841 -
Vium1398g00024 392 MobiDBLite consensus disorder prediction 344 384 - -
Vium1398g00024 392 SMART ring_2 195 235 IPR001841 -
Vium1398g00024 392 SUPERFAMILY RING/U-box 175 244 - -
Vium1398g00024 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 240 - -
Vium1398g00024 392 Pfam Protein of unknown function (DUF1117) 266 371 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1398g00024 Vium-Chr1398 156153 158480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1398g00024 128 245 C3H Transcription Factor Family AT5G01980 38.983 3.28e-23 99.4