Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1398g00020 ATGTGTGTACAGTTTTTTTGGTTGCTCTGCCTCGTGATGGCCAAAACCAGAACATTTCTGCTTGGGCTTCCTCTCTGTGTTTTGACCCTTCTTCTGGTCACAAACACTGCAAAGTGTCAAGAGTTTTTCTTCAACGGATTTGATGGTGCTTCTGCCACCAACATCGCCTTAAACGGAGGAGCAGTGATTGAGCACAAGGGCTTGCTTCGTTTAACAAACAACACTCAGAGAGTAATTGGGCACGCGTTTTATCCAACCCCAATTCAGTTCAAGCACAACAACAAAAGCTCTTCCACCGACCCAAAACTTTTTTCCTTTTCCACTGCTTTTGCGTTTGCAATCATCCCTCAGTACCCAAAACTCGGTGGCCACGGTTTTGCCTTCACCATTTCGCGCTCCAGGTCGCTGTCGGATGCATACCCGAGTCAGTATTTGGGCCTCCTCAACCCAAAAGAATTGGGGAATTTCTCAAACCACCTTTTCGCAGTGGAGTTCGATACCGTCCAAGACTTCGAGTTCGAGGACATCAATGACAACCATGTTGGTGTCAACCTCAACAACATGGTATCCAACAAATCCGTTGAAGCTGCGTTTTTCCCTGAGGATTCAACCAATAAGCAAAACCTGAGTTTGAAGAGTGGTAAAGTGACACAAGCATGGGTTGATTATGATTCATCAACGAACCAATTGGAGGTTAGACTCTCCCCAACTTCCTCCAAACCCACTTCCCCAATTTTAAAATACAAAGTAGATCTGTCACCAATTCTCCAAGATTCCATGTACGTGGGGTTCTCTTCTTCGACAGGGTTACTCGCAAGCACACACTATATTTTGGGTTGGAGCTTCAAAATAAACGGAGAGGCCAAAACCCTCTCACTGCACAAGCTCCCATCTCTCTCTGCCTCCAACAAAACTCAAAAGCGCTTAAAATTAGGACTCTCCCTTTTATTGGTTCTAACACTCGCCACAATTTCTCTGGGGTGTTACCTATTCAGAAGAATGAAGAACACCGAAGTAATCGAAGCTTGGGAGAGGGACGTTGTTGGGCCACACAGATTCCCATACAAAGAGCTACACAAAGCTACGAAGGGTTTCAAAGACAAGAACTTCCTGGGGTTCGGAGGGTCCGGTCGCGTCTACAAAGGGGTTCTCCCGAAGTCCCACAAGGAAATCGCCGTGAAGCGAATCTCGCACGAATCGAAACAACGTATGCAGGAGTTTGTGTCAGAAGTATCAACCATAGGAAGACTCCGACACAGAAACCTGGTACAGCTACTAGGTTGGTGTCGGAAACAAAACGACCTTTTACTTGTGTACGATTTCATGAGAAATGGAAGCTTGGACAGATACTTGTTCGGTCAACCGAGGAAAATACTAACGTGGGAGGAAAGGTTTAAGATAATAAAGGGAGTGGGTTTGGGGTTGGTGTATTTGCATGAGGAGTGGGAACAAACGGTGATTCACAGAGACGTCAAAGCGGGGAACGTTTTGTTGGATAGTGACATGAATGGGAGGTTGGGGGATTTTGGGTTGGCCAAGCTTTACGAGCATGGTGCCAAGCCTAGCACCACACGTGTGGTGGGAACGATGGGGTACCTTGCACCTGAACTCACACGAACGGGGAAACCCACCACCAGTTCTGATGTTTACGCTTTCGGAGTGTTGTTGTTGGAGGTGGTGTGCGGGAGGAGGCCCATTGAGGTGAAGGCATTGCCGGAGGAGCTGGTGCTGGTGGACTGGGTCTGGGAGCGGTGGCGCATGGGGGCGCCGCTGGCGGTGGTGGACCCCAGGTTGGGTGGGGCGTTTGATGAGGTGGAAGTTTTGGTAGTGATTAAAGTGGGGTTGTACTGTTCCGCGGAGGCACCAGAGAAGAGGCCCAGCATGAGGCAGGTGGTGAGGTATTTGGAGAGGGAGGTGGCGCCGCCTCCGCCGGTGGTTTACGGGAAAAAAGAAGATGGTGGTGGTGGCTACTACGAGGAGTTACATTCGTATTCGCCGTGGTCGTCGGTGGGTGATGACGTGGCGTCGTCTCTTTCACTTTCCGGTGGCCGGTAA 2055 0.4944 MCVQFFWLLCLVMAKTRTFLLGLPLCVLTLLLVTNTAKCQEFFFNGFDGASATNIALNGGAVIEHKGLLRLTNNTQRVIGHAFYPTPIQFKHNNKSSSTDPKLFSFSTAFAFAIIPQYPKLGGHGFAFTISRSRSLSDAYPSQYLGLLNPKELGNFSNHLFAVEFDTVQDFEFEDINDNHVGVNLNNMVSNKSVEAAFFPEDSTNKQNLSLKSGKVTQAWVDYDSSTNQLEVRLSPTSSKPTSPILKYKVDLSPILQDSMYVGFSSSTGLLASTHYILGWSFKINGEAKTLSLHKLPSLSASNKTQKRLKLGLSLLLVLTLATISLGCYLFRRMKNTEVIEAWERDVVGPHRFPYKELHKATKGFKDKNFLGFGGSGRVYKGVLPKSHKEIAVKRISHESKQRMQEFVSEVSTIGRLRHRNLVQLLGWCRKQNDLLLVYDFMRNGSLDRYLFGQPRKILTWEERFKIIKGVGLGLVYLHEEWEQTVIHRDVKAGNVLLDSDMNGRLGDFGLAKLYEHGAKPSTTRVVGTMGYLAPELTRTGKPTTSSDVYAFGVLLLEVVCGRRPIEVKALPEELVLVDWVWERWRMGAPLAVVDPRLGGAFDEVEVLVVIKVGLYCSAEAPEKRPSMRQVVRYLEREVAPPPPVVYGKKEDGGGGYYEELHSYSPWSSVGDDVASSLSLSGGR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1398g00020 684 FunFam L-type lectin-domain containing receptor kinase S.4 38 290 - -
Vium1398g00020 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Vium1398g00020 684 Gene3D - 39 302 - -
Vium1398g00020 684 SMART serkin_6 365 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1398g00020 684 FunFam L-type lectin-domain containing receptor kinase S.1 350 441 - -
Vium1398g00020 684 Gene3D Transferase(Phosphotransferase) domain 1 442 643 - -
Vium1398g00020 684 CDD lectin_legume_LecRK_Arcelin_ConA 41 286 IPR001220 GO:0030246
Vium1398g00020 684 Pfam Legume lectin domain 40 296 IPR001220 GO:0030246
Vium1398g00020 684 PANTHER - 34 642 - -
Vium1398g00020 684 ProSiteProfiles Protein kinase domain profile. 365 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1398g00020 684 Gene3D Phosphorylase Kinase; domain 1 350 441 - -
Vium1398g00020 684 Pfam Protein kinase domain 366 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1398g00020 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 299 IPR013320 -
Vium1398g00020 684 SUPERFAMILY Protein kinase-like (PK-like) 348 643 IPR011009 -
Vium1398g00020 684 CDD STKc_IRAK 371 637 - -
Vium1398g00020 684 ProSitePatterns Protein kinases ATP-binding region signature. 371 394 IPR017441 GO:0005524
Vium1398g00020 684 FunFam L-type lectin-domain containing receptor kinase S.4 442 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1398g00020 Vium-Chr1398 128922 131384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1398g00020 39 646 Receptor kinase-like Gene Family AT3G55550 61.138 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium1398g00020 Pkinase 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1398g00020 - - gmx:100787552 1046.19