Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1398g00017 ATGGCGAATCGGTGGTGGGCTGGGAATGTGGGAATGATTAGAGAGCAAGAGTTGATGGAGAACAATAACAACGCCAATACTACTCCGACCAATAGCAGCAACAGCAACACAAACGCCAACACCAACACCACGGAGGAAGAGGTCAGCAGGGACAACGGAGACGACCAGAATCAGAACCTTGTAAGCCATGAAGGTTCGGAGCCCGGAAGCGGTGGTCGGAGGCCACGTGGCAGGCCTCCCGGCTCCAAGAACAAGCCCAAGCCGCCGATTGTCATAACCAAAGAAAGCCCCAACGCGCTCCGAAGCCACGTGCTGGAAATCGCCAGCGGTAGTGATGTAGCAGAGAGCATCGCCGCCTTCGCCAACCGCCGCCACCGCGGCGTGTCGGTCCTCAGCGGCAGCGGCATTGTCACCAACGTCACTCTCCGCCAACCCGCCGCGCCCGCAGGAGTCATCACCCTCCACGGAAGGTTCGAGATTCTCTCCCTCTCCGGCGCTTTTTTGCCCTCTCCTTCGCCTCCTGGCGCCACCGGACTCTCCGTCTATTTGGCCGGAGGGCAGGGGCAGGTCGTTGGCGGCACCGTTGCTGGTTCTTTGGTGGCCTCCGGACCGGTGATGGTGATCGCCGCCACATTCGCCAATGCTACTTATGAGAGGCTGCCGCTGGAGGATGAACAAGGTGAAGAAGAAATGCAAGTGCAACAGCAATCGCAGCCGCAACAACAACAACAATCTCAGGGTTTAGGTGAACAAGTTTCAATGGCCATGTATAATTTGCCTCCTAATTTGCTACACAATGGTCAGAACATGCCTCATGATGTGTTTTGGGGAGCTGCTCCACCTCGTCCTCCACCTTCCTTCTGA 864 0.5718 MANRWWAGNVGMIREQELMENNNNANTTPTNSSNSNTNANTNTTEEEVSRDNGDDQNQNLVSHEGSEPGSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEIASGSDVAESIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLSVYLAGGQGQVVGGTVAGSLVASGPVMVIAATFANATYERLPLEDEQGEEEMQVQQQSQPQQQQQSQGLGEQVSMAMYNLPPNLLHNGQNMPHDVFWGAAPPRPPPSF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1398g00017 287 ProSiteProfiles PPC domain profile profile. 97 234 IPR005175 -
Vium1398g00017 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 278 IPR014476 GO:0003680
Vium1398g00017 287 MobiDBLite consensus disorder prediction 22 46 - -
Vium1398g00017 287 MobiDBLite consensus disorder prediction 22 97 - -
Vium1398g00017 287 PIRSF ESCAROLA 11 286 IPR014476 GO:0003680
Vium1398g00017 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 225 - -
Vium1398g00017 287 Gene3D - 100 242 - -
Vium1398g00017 287 MobiDBLite consensus disorder prediction 224 251 - -
Vium1398g00017 287 FunFam AT-hook motif nuclear-localized protein 100 228 - -
Vium1398g00017 287 CDD DUF296 101 212 IPR005175 -
Vium1398g00017 287 MobiDBLite consensus disorder prediction 231 251 - -
Vium1398g00017 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 213 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1398g00017 Vium-Chr1398 101849 104155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1398g00017 1 287 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.063 1.28e-77 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1398g00017 - - gmx:102667174 416.387