Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1398g00012 ATGGAGGATTCTCAGTACTTGTTGTGGTTCAAGAGAAAACAAATCTTGAACTCACATATTCAACAACCGTTTGGAGCCCGCATCACCAACACCAACTCATCATGGGAGGAAAGAGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGATCATACTCTTGTAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAATGTTCACAGGAGGGACAGGGCTAGGCTCAAACAAAGCCTTGGTCACCCTAATGAATCCCTTCAACATCTTCACAAAAATGATTGTTCGGCTGCAGCAAGCAAAGCCTCATCTTCTAGGCCCTCAACTATATCCACTCAAGAAAATTGTTATCATCAACCTACCATGTCTCCTTACTCTCCTTCGTTTAGCTGGGGACATCACCACATGGGGTCTTCTGATTCAGAACCAAAAGGGTCTGCAGTGAATGGAAGGGAACAGTTTTTAAAAGGTTCGGGTTGCAATGATTATGTTGAAACAAGTTTGTCTGTGGGACAAAGTTCAGTGTTTGGCCAAAAGTTACCAATTGAATCATATGGGGACGAAGCTATCAGTTATAAAAGATCAAAGACTTCTATGCCTCCTTTGCCTGTCTTCCACAAGCCATGTTCAAGTGATAGACACCTAACTTTTCATTCTGCAGAATTTGTACTTGGACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTATTTAG 774 0.4328 MEDSQYLLWFKRKQILNSHIQQPFGARITNTNSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLGHPNESLQHLHKNDCSAAASKASSSRPSTISTQENCYHQPTMSPYSPSFSWGHHHMGSSDSEPKGSAVNGREQFLKGSGCNDYVETSLSVGQSSVFGQKLPIESYGDEAISYKRSKTSMPPLPVFHKPCSSDRHLTFHSAEFVLGLKPGMEDLDLELRLGKPQKVI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1398g00012 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Vium1398g00012 257 Pfam C2H2-type zinc finger 58 82 - -
Vium1398g00012 257 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Vium1398g00012 257 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vium1398g00012 257 PANTHER OS07G0101800 PROTEIN 29 254 - -
Vium1398g00012 257 MobiDBLite consensus disorder prediction 139 158 - -
Vium1398g00012 257 SMART c2h2final6 58 80 IPR013087 -
Vium1398g00012 257 MobiDBLite consensus disorder prediction 105 128 - -
Vium1398g00012 257 Gene3D Classic Zinc Finger 55 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1398g00012 Vium-Chr1398 80162 81584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1398g00012 20 90 C2H2 Transcription Factor Family AT2G37740 66.216 9.79e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1398g00012 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1398g00012 - - gmx:102663477 417.927