Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13983g00003 ATGGATCAGTATGAGAAAGCAGATAAAGGGCACCAAGAGAAGCATCAAAGTTTTGGCCACTTTGTGGTGATGAATAATGATGAGGATGAGGTTGATGCTGATGAATACTCCTCCATGATTGGTGTCTTTGGATATCTTCCAGCCACCATGGAGGATTCAGAGTTGGAGATGTATGAAAATCTGACTATGTTGGAGGAAGAGGTTGCAATGAGTGACTCTTTTGGTACTTTACCTGAGTTTGTGCATTGTGGAAAAGAGGCCAACCTTGGTGTGGAGCAAGGGTTAGAGTTGGTTCATATGCTGCTGGCCTGTGCTGAAGCTGTGGGGTGCAGGGACAACCACCAGGCAGAGTTGCTGATTAACAGAATCTGGGCTTTGGCAAGCCCTTCAGGAGATGCACTGCAGAGAGTTTCTTACTGTTTTGCCACAGGATTGAAGTGCAGGTTGTCAAAAAGTACTTTTATGGATATGCCTTTGATCAATAGGGAGAATAAGCTGGAAGCATTTCAACTTCTTTACCAAATCACACCTTACATTGCCTTTGGTTTCATGGCTGCAAATGAAGCCATATTCCAAGCATCACAAGGAAAGAGCTCAATACACATTGTTGATTTAGGAATGCAGCATACCCTTCAATGGTCTTCTCTGATCAGGGCCTTTGTTTCAAGGCCTGAAGGACCTCCAATGGTTAGGATCACTGGCTTAACAGACAATGAAGATAACTCTAAACTTCAAACCAGCATGAATGTGCTTGTGCAGGAAGCAAGCTCTTTGGGAATGCACCTTGAATTCCATACAATTTCTGAGCCTGCATCTCCTTCAGTTTTTACTGTGGAGAAGCTGAACTTGAGAAAAGGTGAAGTTTTATTTGTTAATAGTATCTTGCAGTTGCACAAGTATGTGAAAGAGAGTAGAGGCAATCTGAAGGAAATTCTGGTGTCAGTGAAGAAGTTAGGTCCAACTGCTTTTACAGTGGTGGAGCAAGACACAAACCATAATGGCCCTTTCTTCCTTGGGAGATTTTTGGAGTCCCTTCACTATTACTCAGCCATATTTGACTCTCTTGAGGCATGCATGCCAAGAAACAGCCAACAAAGGATGAAGATAGAGAGATTACACTTTGCAGAGGAAATTCTGAATATTGTAGCTTATGAGGGTCCAGAGAGAATAGAAAGACATGAAAGGGTAGAGCAGTGGAGAAGGCAATTAGGCAGAGCAGGATTTCAGGTGATGCCATTGAAGTGCACAAGCCAAGTTAGAATGATGCTTTCTGTTTATGACTGTGATGGCTACACATTATCAAGTGAAAAGGGAAACCTTCTACTTGGATGGAAAGGAAGGCCAGTAATTATGTCTTCTGCATGGCAAGTGGCAAGTGTTTGA 1383 0.4288 MDQYEKADKGHQEKHQSFGHFVVMNNDEDEVDADEYSSMIGVFGYLPATMEDSELEMYENLTMLEEEVAMSDSFGTLPEFVHCGKEANLGVEQGLELVHMLLACAEAVGCRDNHQAELLINRIWALASPSGDALQRVSYCFATGLKCRLSKSTFMDMPLINRENKLEAFQLLYQITPYIAFGFMAANEAIFQASQGKSSIHIVDLGMQHTLQWSSLIRAFVSRPEGPPMVRITGLTDNEDNSKLQTSMNVLVQEASSLGMHLEFHTISEPASPSVFTVEKLNLRKGEVLFVNSILQLHKYVKESRGNLKEILVSVKKLGPTAFTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEACMPRNSQQRMKIERLHFAEEILNIVAYEGPERIERHERVEQWRRQLGRAGFQVMPLKCTSQVRMMLSVYDCDGYTLSSEKGNLLLGWKGRPVIMSSAWQVASV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13983g00003 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 69 451 IPR005202 -
Vium13983g00003 460 Pfam GRAS domain family 97 456 IPR005202 -
Vium13983g00003 460 ProSiteProfiles GRAS family profile. 88 456 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13983g00003 Vium-Chr13983 12500 14205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13983g00003 92 460 GRAS Transcription Factor Family AT1G66350 39.683 2.27e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium13983g00003 GRAS 1.5e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13983g00003 - - vum:124822266 923.309