Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13983g00002 ATGAAAAGCACGCTTTACCTCTGCACCACACCACCACTGTTGTTGCCATTAAAATCACTGTCCACCACCATCACCATTGCTGGTGTAGAGGAAGAAGAGTGGGAGAATACTGTCATTAAGAATGAAGATCTTGAGGAGCTGCGAGAACTAGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGAGGAACAGATGTTGCTATTAAAAGAATAAAGAAGAGCTGCTTCACGGGTCGGTCATCTGAACAAGAGAGATTGACTGTGGAGTTTTGGCGGGAAGCTGACATTCTCTCCAAACTTCATCATCCAAATGTGGTTGCATTTTATGGTGTGGTACAGCATGGACCAGGTGGTACAATGGCCACTGTGGCAGAATATATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCTGCTTTTGGAATGGAATATTTGCACTCAAAAAACATTGTGCATTTTGACTTAAAATGTGACAATTTGCTTGTAAACTTGAAAGATCCTTTACGTCCAATATGCAAGGTTGGTGATTTTGGCTTATCAAAAATTAAGCGAAATACTTTGGTTACTGGTGGTGTGCGTGGGACACTACCTTGGATGGCACCAGAGCTTCTGAATGGAAGCAGCAATAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATTGTATTATGGGAAATTCTTACCGGTGAGGAGCCATATGCCAATATGCATTATGGTGCAATTATAGGAGGAATTGTAAATAACACATTAAGGCCAACCATCCCAAGTAACTGTGATCCTGAATGGAGAACACTGATGGAACAATGCTGGGCTCCCAATCCTGCAGTCAGACCATCCTTCACAGAAATTGCCAGTCGTTTGCGCATAATGTCTGCGGCAGCAAGCCAAACCAAAACACAGGGCCATAAAACATCTAAATGA 981 0.4302 MKSTLYLCTTPPLLLPLKSLSTTITIAGVEEEEWENTVIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQHGPGGTMATVAEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSNCDPEWRTLMEQCWAPNPAVRPSFTEIASRLRIMSAAASQTKTQGHKTSK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13983g00002 326 PIRSF ILK 18 326 - -
Vium13983g00002 326 Gene3D Phosphorylase Kinase; domain 1 36 131 - -
Vium13983g00002 326 PRINTS Tyrosine kinase catalytic domain signature 163 181 IPR001245 GO:0004672|GO:0006468
Vium13983g00002 326 PRINTS Tyrosine kinase catalytic domain signature 278 300 IPR001245 GO:0004672|GO:0006468
Vium13983g00002 326 PRINTS Tyrosine kinase catalytic domain signature 126 139 IPR001245 GO:0004672|GO:0006468
Vium13983g00002 326 PRINTS Tyrosine kinase catalytic domain signature 234 256 IPR001245 GO:0004672|GO:0006468
Vium13983g00002 326 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 37 131 - -
Vium13983g00002 326 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 132 324 - -
Vium13983g00002 326 ProSiteProfiles Protein kinase domain profile. 44 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13983g00002 326 ProSitePatterns Protein kinases ATP-binding region signature. 50 75 IPR017441 GO:0005524
Vium13983g00002 326 SUPERFAMILY Protein kinase-like (PK-like) 26 307 IPR011009 -
Vium13983g00002 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vium13983g00002 326 SMART serkin_6 44 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13983g00002 326 Pfam Protein tyrosine and serine/threonine kinase 45 307 IPR001245 GO:0004672|GO:0006468
Vium13983g00002 326 Gene3D Transferase(Phosphotransferase) domain 1 132 326 - -
Vium13983g00002 326 PANTHER SERINE-THREONINE PROTEIN KINASE 39 308 - -
Vium13983g00002 326 CDD STKc_MAP3K-like 50 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13983g00002 Vium-Chr13983 5702 10253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13983g00002 38 326 MAP Kinase Kinase Kinase AT1G16270 86.942 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium13983g00002 PK_Tyr_Ser-Thr 1.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13983g00002 - - gmx:100816522 567