Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13983g00001 TTCTGGGAAAGAAAATCAGTGGATGCAGAAGACTCAGAAGGGGATGAGGAGCTAGACTATGTCTTTGAGACAGTCATTAAGAATGAAGATCTTGAGGAGCTGCGAGAACTAGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGAGGAACAGATGTTGCTATTAAAAGAATAAAGAAGAGCTGCTTCACGGGTCGGTCATCTGAACAAGAGAGATTGACTGTGGAGTTTTGGCGGGAAGCTGACATTCTCTCCAAACTTCATCATCCAAATGTGGTTGCATTTTATGGTGTGGTACAGCATGGACCAGGTGGTACAATGGCCACTGTGGCAGAATATATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCTGCTTTTGGAATGGAATATTTGCACTCAAAAAACATTGTGCATTTTGACTTAAAATGTGACAATTTGCTTGTAAACTTGAAAGATCCTTTACGTCCAATATGCAAGGTTGGTGATTTTGGCTTATCAAAAATTAAGCGAAATACTTTGGTTACTGGTGGTGTGCGTGGGACACTACCTTGGATGGCACCAGAGCTTCTGAATGGAAGCAGCAATAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATTGTATTATGGGAAATTCTTACCGGTGAGGAGCCATATGCCAATATGCATTATGGTGCAATTATAGGAGGAATTGTAAATAACACATTAAGGCCAACCATCCCAAGTAACTGTGATCCTGAATGGAGAACACTGATGGAACAATGCTGGGCTCCCAATCCTGCAGTCAGACCATCCTTCACAGAAATTGCCAGTCGTTTGCGCATAATGTCTGCGGCAGCAAGCCAAACCAAAACACAGGGCCATAAAACATCTAAATGA 942 0.4268 FWERKSVDAEDSEGDEELDYVFETVIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQHGPGGTMATVAEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSNCDPEWRTLMEQCWAPNPAVRPSFTEIASRLRIMSAAASQTKTQGHKTSK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13983g00001 313 PRINTS Tyrosine kinase catalytic domain signature 221 243 IPR001245 GO:0004672|GO:0006468
Vium13983g00001 313 PRINTS Tyrosine kinase catalytic domain signature 150 168 IPR001245 GO:0004672|GO:0006468
Vium13983g00001 313 PRINTS Tyrosine kinase catalytic domain signature 265 287 IPR001245 GO:0004672|GO:0006468
Vium13983g00001 313 PRINTS Tyrosine kinase catalytic domain signature 113 126 IPR001245 GO:0004672|GO:0006468
Vium13983g00001 313 Pfam Protein tyrosine and serine/threonine kinase 32 294 IPR001245 GO:0004672|GO:0006468
Vium13983g00001 313 Gene3D Transferase(Phosphotransferase) domain 1 119 313 - -
Vium13983g00001 313 ProSiteProfiles Protein kinase domain profile. 31 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13983g00001 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Vium13983g00001 313 SMART serkin_6 31 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13983g00001 313 Gene3D Phosphorylase Kinase; domain 1 24 118 - -
Vium13983g00001 313 PIRSF ILK 8 313 - -
Vium13983g00001 313 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 119 311 - -
Vium13983g00001 313 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 24 118 - -
Vium13983g00001 313 PANTHER SERINE-THREONINE PROTEIN KINASE 27 295 - -
Vium13983g00001 313 CDD STKc_MAP3K-like 37 294 - -
Vium13983g00001 313 SUPERFAMILY Protein kinase-like (PK-like) 20 294 IPR011009 -
Vium13983g00001 313 ProSitePatterns Protein kinases ATP-binding region signature. 37 62 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13983g00001 Vium-Chr13983 1010 5600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13983g00001 25 313 MAP Kinase Kinase Kinase AT1G16270 86.942 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium13983g00001 PK_Tyr_Ser-Thr 1.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13983g00001 - - gmx:100816522 567