Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1397g00001 ATGCAGTGTTTTGATTATTTGCTCATTGTTATTTTACCTGACAATGATGGATCTCTTTATGGTGATCTCAAACGTATATGTGAGACAGATCTTGGACTAGTTTCACAATGTTGTTTGACTAAGCACGTCTTTAAAATGAGCAAGCAGTACCTCGCAAATGTGGCATTGAAAATTAATGTCAAAGTGGGAGGGAGAAACACTATACTTGTTGATGCACTTTCACGGCGCATCCCCTTTGTTGGAGACAGACCCACTATTATTTTTGGAGCTGATGTGACTCATCCACATCCTGGAGAGGATTCGAGCCCATCAATTGCAGTTGTATGA 327 0.4037 MQCFDYLLIVILPDNDGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTILVDALSRRIPFVGDRPTIIFGADVTHPHPGEDSSPSIAVV 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1397g00001 108 Gene3D - 5 74 - -
Vium1397g00001 108 SUPERFAMILY Ribonuclease H-like 7 108 IPR012337 -
Vium1397g00001 108 Gene3D - 76 108 IPR036397 GO:0003676
Vium1397g00001 108 Pfam Piwi domain 8 106 IPR003165 GO:0003676
Vium1397g00001 108 ProSiteProfiles Piwi domain profile. 7 108 IPR003165 GO:0003676
Vium1397g00001 108 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 7 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1397g00001 Vium-Chr1397 5428 6016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1397g00001 7 108 Eukaryotic Initiation Factors Gene Family AT1G48410 92.157 1.79e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1397g00001 K11593 - gmx:100778754 198.749