Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1396g00012 ATGGTACTGAAGTTTTCAGGTTCTTACAAGCAGTGCAGACCTTGCACAGGGTCCAGTGCCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCCTATATTGGAGGAGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCTATATCCCTGGTGGTAGATCAGACCAAAGATTTATGGGTGGCTTGAATGGTGATAGGACCTCTAGAGGCCCTGAGTCAGCACCAGCATGTGATGTTGTTGTTGAGGAAGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGTGTTCACATTACCTTTGTGTCTCTTCCTAATGGTGGAAATGATCTCAAAAGAATTCGCTTCAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAGCTTTACAATGTCCAGAGATTCAATCGACAAGCTCTTAACACTCCTTCCAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGACTGACATCTGGACAAGAAAGCCCGGGGTCGATGTCGTTGAAGGAATGGACACCAAGGAATCACTATAAACCCTCATTGAATAACCAATCTGAAGCTATGGATCAAGGTGGTGGTCCAAACTTCCCAACAGGATCATCTGTGGAAGCATCTAGGACAACCACTTCTTCTAGAGACGAGCCTTCAATGAGCAATGCTAGTGACCTGGAGGCAGAATGGATTGAGCAAGATGAACCTGGAGTGTACATCACGATCAGGCAACTAGCTGATGGAACCAAGGAGCTTCGTCGTGTCAGATTCAGCCGGGAGAGATTTGGAGAGGGGCATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATACCTTTGA 921 0.4647 MVLKFSGSYKQCRPCTGSSAYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSYIPGGRSDQRFMGGLNGDRTSRGPESAPACDVVVEEEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREIFDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRLTSGQESPGSMSLKEWTPRNHYKPSLNNQSEAMDQGGGPNFPTGSSVEASRTTTSSRDEPSMSNASDLEAEWIEQDEPGVYITIRQLADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1396g00012 306 MobiDBLite consensus disorder prediction 164 247 - -
Vium1396g00012 306 ProSiteProfiles BRX domain profile. 100 155 IPR013591 -
Vium1396g00012 306 MobiDBLite consensus disorder prediction 202 244 - -
Vium1396g00012 306 ProSiteProfiles BRX domain profile. 251 306 IPR013591 -
Vium1396g00012 306 Pfam Transcription factor regulating root and shoot growth via Pin3 250 305 IPR013591 -
Vium1396g00012 306 Pfam Transcription factor regulating root and shoot growth via Pin3 100 154 IPR013591 -
Vium1396g00012 306 MobiDBLite consensus disorder prediction 179 195 - -
Vium1396g00012 306 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 306 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1396g00012 Vium-Chr1396 27686 30159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1396g00012 1 306 Major Intrinsic Protein MIP AT1G31880 65.287 3.17e-139 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1396g00012 - - vum:124826203 635.95