Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1396g00011 ATGTTTACATGCATAGCGTGTACGAAGCAAACGGCGGAGGAAGGGGAAGAAGGTTGTGAGAGTGGCACGTCGAGTACAAAAGAAGTTGTCAAAAGTCTGAGTGCGCAGTTAAAGGATATGGTACTGAAGTTTTCAGGTTCTTACAAGCAGTGCAGACCTTGCACAGGGTCCAGTGCCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCCTATATTGGAGGAGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCTATATCCCTGGTGGTAGATCAGACCAAAGATTTATGGGTGGCTTGAATGGTGATAGGACCTCTAGAGGCCCTGAGTCAGCACCAGCATGTGATGTTGTTGTTGAGGAAGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGTGTTCACATTACCTTTGTGTCTCTTCCTAATGGTGGAAATGATCTCAAAAGAATTCGCTTCAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAGCTTTACAATGTCCAGAGATTCAATCGACAAGCTCTTAACACTCCTTCCAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGACTGACATCTGGACAAGAAAGCCCGGGGTCGATGTCGTTGAAGGAATGGACACCAAGGAATCACTATAAACCCTCATTGAATAACCAATCTGAAGCTATGGATCAAGGTGGTGGTCCAAACTTCCCAACAGGATCATCTGTGGAAGCATCTAGGACAACCACTTCTTCTAGAGACGAGCCTTCAATGAGCAATGCTAGTGACCTGGAGGCAGAATGGATTGAGCAAGATGAACCTGGAGTGTACATCACGATCAGGCAACTAGCTGATGGAACCAAGGAGCTTCGTCGTGTCAGATTCAGCCGGGAGAGATTTGGAGAGGGGCATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATACCTTTGA 1038 0.4653 MFTCIACTKQTAEEGEEGCESGTSSTKEVVKSLSAQLKDMVLKFSGSYKQCRPCTGSSAYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSYIPGGRSDQRFMGGLNGDRTSRGPESAPACDVVVEEEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREIFDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRLTSGQESPGSMSLKEWTPRNHYKPSLNNQSEAMDQGGGPNFPTGSSVEASRTTTSSRDEPSMSNASDLEAEWIEQDEPGVYITIRQLADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1396g00011 345 ProSiteProfiles BRX domain profile. 290 345 IPR013591 -
Vium1396g00011 345 MobiDBLite consensus disorder prediction 218 234 - -
Vium1396g00011 345 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 345 IPR044532 -
Vium1396g00011 345 Pfam Transcription factor BRX N-terminal domain 22 54 IPR027988 -
Vium1396g00011 345 Pfam Transcription factor regulating root and shoot growth via Pin3 139 193 IPR013591 -
Vium1396g00011 345 Pfam Transcription factor regulating root and shoot growth via Pin3 289 344 IPR013591 -
Vium1396g00011 345 MobiDBLite consensus disorder prediction 241 283 - -
Vium1396g00011 345 MobiDBLite consensus disorder prediction 203 286 - -
Vium1396g00011 345 ProSiteProfiles BRX domain profile. 139 194 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1396g00011 Vium-Chr1396 18228 25854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1396g00011 1 345 Major Intrinsic Protein MIP AT1G31880 64.507 9.50e-156 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1396g00011 - - vum:124826203 635.95