Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1396g00001 ATGATTGGCATGGCTTCTTCAAGCTCTCTCTTGAGGATGGAAGAAATAGCAGGGAAAGGAAGAGGTCTCGTTGCAGCAAAATCCCTGAAAGCAGGTCAAATAATTCTCACTGAATCCCCTCTCATTCTCTACTCAGCTTCTCCTCTCTATGCACCATCTTCTTCACCTTTCACCAACTGTGATCACTGCTTCAGAATCTTATCCTCTCACACAACCATTTTCCGATGCCCCTCTTGCTCCCACCACACTTTCTGCTCCCAAAGCTGTCTCTCACTTGCACAAAACTCCTCACACTCCAATTGGGTATGCAAAGCTCTCACCTTTCTTCTTCAACACCCCAACTCAACACTCTTTCAACAACACCCTCCAGAACGCCAAGTTCAAGCTCGTTTCGTTGTAGCTTCTCACAACCTCTTCCTCCACTCCCCTTCTCAACTTCACACTTTCCTCTCTCTTCATGGCACTCCAGATACTGCCATTTATGATGTTGCCAAGTTTCTCCATTCTCTAATCTCACCTCTTTTCCCACCCGAGGGTCAACTTTCTGTAGATCTCACTGCACAACTTCTTGCAAAGGACAGACTCAACTCCTTCTGCTTAATGGACCCCTATTCCCCTGATGGACCTCAGAGATCCATCAAAGCTTATGCTATTTACCCCAAAGCCACGTTCTTCAACCATGACTGTGTTCCCAATGCCTGCAGGTTCGATTATGTGGACACTGGTGATGAACACAACACTGACATAGTTTTTAGGTTGATCGAGGATGTTCCTGCTGGGAAAGAGATCTGCATCAGCTATTTCAGGATTGGAAGGGATTATTTCACCAGAAAAAGGATCTTGATGGAGGATTATGGCTTCACTTGTGGATGTGATAGGTGCAGGATCGAAGCAAATTGGGGAGAAAACCAGGTGGAGATGAACAGTGACCTGCCACACGTGCGGTTCCTTCGCAAGCATATTTGTGAGAGGAAGAATTGTGCTGGCACAATGGCTCCTCTGCCTCCAAAAGATGATGTGCCTTCTAATATTCTGGAGTGTAACTTCTGTGGCAATTTGAAAGAAATATGA 1071 0.4585 MIGMASSSSLLRMEEIAGKGRGLVAAKSLKAGQIILTESPLILYSASPLYAPSSSPFTNCDHCFRILSSHTTIFRCPSCSHHTFCSQSCLSLAQNSSHSNWVCKALTFLLQHPNSTLFQQHPPERQVQARFVVASHNLFLHSPSQLHTFLSLHGTPDTAIYDVAKFLHSLISPLFPPEGQLSVDLTAQLLAKDRLNSFCLMDPYSPDGPQRSIKAYAIYPKATFFNHDCVPNACRFDYVDTGDEHNTDIVFRLIEDVPAGKEICISYFRIGRDYFTRKRILMEDYGFTCGCDRCRIEANWGENQVEMNSDLPHVRFLRKHICERKNCAGTMAPLPPKDDVPSNILECNFCGNLKEI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1396g00001 356 Gene3D SET domain 22 294 IPR046341 -
Vium1396g00001 356 CDD SET_SMYD 195 294 - -
Vium1396g00001 356 Gene3D - 120 197 - -
Vium1396g00001 356 Pfam SET domain 20 267 IPR001214 GO:0005515
Vium1396g00001 356 SUPERFAMILY SET domain 13 294 IPR046341 -
Vium1396g00001 356 SMART set_7 9 274 IPR001214 GO:0005515
Vium1396g00001 356 Gene3D - 59 119 - -
Vium1396g00001 356 ProSiteProfiles SET domain profile. 9 268 IPR001214 GO:0005515
Vium1396g00001 356 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 304 355 IPR044238 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1396g00001 Vium-Chr1396 1930 3209 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium1396g00001 SET 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1396g00001 - - gmx:100808530 573.933