Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13955g00001 ATGGAGGGTCGTCATCTCCATCACCATCACCGGCAGCAGCAACAGCAACAGCAACAACAACATCAGCAGCATCAGCATCAGCATCACCACTCTCACAACATCACAACCAGTGCTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCAGGAGACAAAAGAGTTCCTCGTGATCCGTGCGGAGCTGGATCAGACTTTCATGGAGACAAAGCGGAACAAACAGCTTTGGGAAGTCATCTCCAACAGGATGAAGGAAAAGGGTTTCCTTAGAAGTGCAGAACAGTGCAAATGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGGGTGTGAAGCGATAGAGCCAGAGGCGATGAGGCAGCAATTCCCGTTTTACAATGAGCTTCAAGGGATTTTCGCATCAAGGATGCAGAGAATGTTGTGGGCAGAAGCAGAAGGAGGGTCGAAGAAGAAGGTGGTGCAGCTTTCATCGGAGGATGAGGAAGAGGGAAAGGAAGAGAGTGAGGGAGATCAGAAGGGTAGCGTGATGAAAAAGAAGAAGAAGGGGAAGATGGTAATAGGAGGAGGGAGTGGTAGCAGTAGAAATATGGAGAGTTTGAAGGAGATCATGGAGGAGTTCATGAGGCAACAGATGCAGATGGAGGCACAGTGGATGGAGGCGTTTGAGGCAAGGGAGAACGAGAGGAGGATGAAGGAGATGGAGTGGAGGAAAACCATGGAGGCATTGGAGAATGAGAGGATGATGATGGATCAGAGATGGAGAGAGAGGGAAGAGCAAAGAAGGATTAGGGAAGAACTTAGGGCTGACAAGAGAGATGCTCTAATCACAGCACTTCTCAACAAGCTCACAAGAGAACAGATGTAG 867 0.4925 MEGRHLHHHHRQQQQQQQQQHQQHQHQHHHSHNITTSANVDATDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFLRSAEQCKCKWKNLVTRYKGCEAIEPEAMRQQFPFYNELQGIFASRMQRMLWAEAEGGSKKKVVQLSSEDEEEGKEESEGDQKGSVMKKKKKGKMVIGGGSGSSRNMESLKEIMEEFMRQQMQMEAQWMEAFEARENERRMKEMEWRKTMEALENERMMMDQRWREREEQRRIREELRADKRDALITALLNKLTREQM 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13955g00001 288 Gene3D - 49 110 - -
Vium13955g00001 288 FunFam Zinc finger and SCAN domain-containing 20 49 110 - -
Vium13955g00001 288 ProSiteProfiles Myb-like domain profile. 49 105 IPR001005 -
Vium13955g00001 288 CDD GT1 47 112 - -
Vium13955g00001 288 MobiDBLite consensus disorder prediction 1 39 - -
Vium13955g00001 288 MobiDBLite consensus disorder prediction 152 196 - -
Vium13955g00001 288 Pfam Myb/SANT-like DNA-binding domain 48 130 IPR044822 -
Vium13955g00001 288 PANTHER FI21293P1 13 284 - -
Vium13955g00001 288 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13955g00001 Vium-Chr13955 5650 7269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13955g00001 35 286 Trihelix Transcription Factor Family AT5G01380 52.650 1.67e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium13955g00001 Myb_DNA-bind_4 2.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13955g00001 - - gmx:100778195 377.867