Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium138g00006 ATGGCTTCGTCTTCGAGTAGCGGATTGACGTTCAAGCTGCATCCTCTAGTAATAGTAAACATCTCCGACCATTACACGAGGGTCAAGTCTCAGATGAACCCAACCCTTGCACCATCGCACGGTAACAACGCCGCCGCACCCAACGGTGGCGACGGCGTCGTTTCGACTCTCCCTCCCCGGGTCTATGGATGTGTCATAGGAGTGCAGAAGGGCCGCACCGTGGAGATCTTCAACAGCTTCGAACTCCTCTATGATCCTTCCACTCATTCCCTCGATCGCACCTTCCTCGAGAAGAAGCAAGAACTCTATAAGAAGGTGTTCCCACACTTCTACATACTGGGATGGTATTCGACTGGAAGTGATGCGGAGGAATCAGACATGCATATTCACAAAGCTCTGATGGATATCAATGAAAGCCCAGTTTATGTTCTTCTCAATCCTTCTATCAATCACTCTCAGAAGGATCTCCCAGTCAGTATTTATGAAAGTGAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCTCTCAAGCTATACTATTGAGACTGTTGAAGCAGAACGGATATCAGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCGGCTACACAGCTGGCTGCTCACCTTACTGGTATACACAGTGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACACCACTATCTTCTTGCAATGCAAAAAGGTGATGTTCCTTGTGAAAATTCACTATTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCCGAGAAATTTCAAGATGATTTCTTAATGGAGTACAATGATACCTTATTGATTAGTTACCTGGCAATGCTTACCAACTGCTCAAGTGGAATGAATGAGCTGGTGGACAAATTTAATACCGCTTATGATAGGCATACCAGAAGGGGTGGACGAACTGCTTTTATGTGA 963 0.4496 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPSHGNNAAAPNGGDGVVSTLPPRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIYESELHVIDGIPQLIFVLSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLISYLAMLTNCSSGMNELVDKFNTAYDRHTRRGGRTAFM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium138g00006 320 SMART pad1_6 10 166 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vium138g00006 320 CDD MPN_CSN6 9 316 IPR033859 GO:0000338|GO:0008180
Vium138g00006 320 FunFam COP9 signalosome subunit 6 1 201 - -
Vium138g00006 320 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 139 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vium138g00006 320 Pfam Maintenance of mitochondrial structure and function 187 301 IPR024969 -
Vium138g00006 320 Gene3D Cytidine Deaminase, domain 2 1 201 - -
Vium138g00006 320 ProSiteProfiles MPN domain profile. 11 167 IPR037518 -
Vium138g00006 320 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 311 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium138g00006 2 271 Eukaryotic Initiation Factors Gene Family AT2G39990 21.818 4.17e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium138g00006 K12179 - gmx:100797079 594.734