Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium138g00004 ATGAAAAGAGCGAAACCATACCTCAGGAGGAACATGTCGTGGTCACCAACACTAGTAATTACCTCCCTTCTTCTGATTGCCTTATTCGTTGCAGTAACAACAGCAGAAGCAGAATCAGAACCGGCATCAACCTCCGATGCGAATCTCCTCATCCGCTTCAAGCAGTTCCACGTTTCCTCCGACCCCCGCGGCTTCCTCTCCGATTGGCTCCCCGACGCGCCGTCCCCGTGCGCCTGGCGCGGCGTTACCTGCTCGCCCCAGCCACCCCGCGTCACCGCCATCGACCTCTCCGGCGCCTCCCTCTCCGGCACCCTCCACCTCCCCACCCTCACATCCCTCCCCTCGCTAAGCACCCTCGTCCTACGTGGCAACTCCTTCTCCGCTTTCAACCTCAGCGTTTCGCCGTTTTGCACGCTTCAAACACTCGACCTCTCTTTCAACAATTTTTCCGGCAATTTTCCTTTCGCAAACCTAACTCCGTGTAACCGCCTCACTTACTTAAACCTCTCCAATAATCTCATCACCGCTGGGCTCGGCCTTGGGCCTGACTCTGGGCTTTCCCTGGCCCAACTCGACTTGTCCAGAAACCTCGTCTCCGACGTGAGCCTTCTCGTGTCCTCTCTCGCGAGCTCCGCTCTCGTTTATCTGAACTTCTCCGACAACAGACTCACGGGTCAACTCGGCGAGTCGCTCGTTTCGCGAAGCGCGAACCTCTCCACCTTGGACCTCTCCCACAATCTTCTCTCTGGGGCGGTGCCGCCTCGGCTCGTGAATGACGCCGTTCAGGTTCTCGATTTCTCGTTCAACAACTTCTCGCGGCTGGATTTCTCCTCGTGCGGTAGCCTAACGCGGTTGAGCTTCTCGCGCAATGCGCTCTCCGGAGAAGAGTTTCCGCGCGGGTTGAGCAGCTGCAACAGGCTCGAGGTTCTGGATCTTTCTCGCAATGAGTTTGAAGCCGAGATTCCCGGGGAGATTCTTCGGAGTTTGAGGAGCTTGAAGTCTTTGTTTCTCGACCGCAACAAATTCTTCGGCGAGATTCCGAGCGAGCTCGGAAGCCTCTGCGGAAGTCTCGTGGAGCTTGATCTCTCCGAGAACATGCTTTCTGGTGCGTTGCCTTTGAGCTTCGTGAACTGTTCTTCTCTGCGGAGTTTGAACCTTGCGAGGAACTATTTCTCTGGGAATTTCCTCGTGTCCGTGGTTAGCAACCTTCAGAGTCTTGAGTATCTAAACGTGGCGTTTAATAACATAACGGGACAGGTTCCGTTTTCGCTTGTTAACCTGAAACGGCTTCGGGTGCTTGACTTGAGCTCGAACCGGTTAAACGGCAATGTTCCGTCGTTCTTTTGCCCTTCCGAGCTGGAGAAGTTGATCCTTGCGGGCAATTACCTTTCCGGGACGGTGCCGTCACAGCTCGGTGATTGTAAGAATTTGAGAACCGTTGATTTCAGCTTTAACAGCTTGAACGGTTCGATTCCGTGGGAGGTTTGGGCTTTGCCTAACCTCTCTGATTTGATTATGTGGGCGAATAATCTCACTGGGGAAATCCCAGAAGGAATTTGTGTTAAAGGAGGGAACTTGGAGAATTTGATTCTCAACAATAACTTCATTTCTGGGTCAATTCCGAAGTCAATTGCCAATTGCACCAACATGATATGGGTGTCGCTGGCGAGCAACCGGTTAACCGGAGCGATACCTTCTGGGATTGGGAAATTGAACGTATTGGCGATTCTCCAGCTTGGGAACAACTCGCTGAGTGGGAGGATTCCACCGGAGATAGGCAAGTGTGGGAAGTTGATATGGTTAGATTTGAATAGCAATAACCTAACTGGGAATATCCCGTTTGAGCTTGCTGATCAAGCGGGACTGGTTATCCCGGGCAAGGTTTCAGGGAAGCAGTTTGCGTTTGTGAGGAACGAGGGTGGGACTAGTTGCAGGGGTGCTGGTGGGTTGGTTGAGTTTGAGGATATCAGAACAGAGAGACTTGAAGGTTTTCCCATGGTGCATTCGTGCCCATTGACGCGGATTTACTCCGGTTGGACCGTGTATACTTTTTCTTCCAATGGGAGCATGATCTACCTTGACCTTTCCTACAACTTGCTGTCTGGGACTATTCCTGGGAATTTGGGTGGCATGGCCTATTTGCAGGTGTTGAATATGGGGCACAATAGGCTGAGTGGGAACATTCCAGATAGTTTTGGTGGTTTGAAAGTAATTGGGGTGCTTGATCTGTCGCATAACAGTCTTAATGGGTCCATCCCTGGTTCATTGCAGAGCCTTTCTTTTCTCAGTGACCTTGACGTCTCTAATAATAATCTCACCGGGTCCATTCCTTCTGGAGGTCAGTTGACTACTTTTCCAGCTTCTAGATACGAGAACAACTCTGGCCTTTGCGGCCTGCCGCTGCCATCGTGTAGTGCTTCGAAGAACCGCTCAGTGGGTGTTGTGGTTTGGAAGAAGAAGCAGCCTGTAGCAGCTGGGGTTGTCATTGGTTTGCTTTGCTTCCTCTTGTTTGCGCTTGGGCTTGTGTTGGCTTTGTACAGGGTGAGGAAGACTCAGAAGAAGGAGGAGATTAGAGAAAAGTATATAGAGAGTCTTCCCACTTCGGGGAGCAGTAGTTGGAAGATTTCCAGCTTTCCTGAGCCTCTGAGCATCAATGTTGCCACCTTTGAGAAGCCTCTGCGGAAGCTGACTTTCGCACATCTTCTCGAGGCTACTAATGGTTTCAGTGCTGAGAGTTTGATCGGCTCTGGGGGATTTGGTGAAGTGTACAAGGCTAAACTTAAAGATGGCTGTGTTGTTGCCATCAAGAAGCTCATTCATGTGACGGGTCAGGGAGATAGGGAGTTCATGGCTGAGATGGAAACTATTGGGAAGATTAAGCATAGGAACCTGGTTCAGCTGCTGGGTTACTGTAAAGTTGGGGAGGAGAGGCTTCTTGTGTACGAGTTCATGAAATGGGGAAGTCTTGAGGCTGTTTTACATGAAAGGGCAAAAGGAGGAGGTTCAAATCTTGATTGGGGTGCAAGAAAGAAGATTGCCATAGGGTCAGCAAGAGGTCTTGCATTTCTTCATCATAGTTGCATTCCTCACATTATACACAGGGACATGAAGTCCAGCAACATTCTTCTTGATGAAGATTTTGAGGCTAGAGTTTCTGATTTTGGCATGGCAAGATTGGTCAATGCCCTCGATACTCATTTAACTGTCAGCACACTTGCCGGAACACCGGGTTATGTACCCCCTGAGTACTACCAGAGTTTCCGATGTACAGCTAAAGGGGATGTCTATAGTTATGGTGTCATACTGCTTGAGCTTCTATCAGGTAGAAGGCCAATCGACTCTTCCGAGTTTGGTGAGGACAACAATCTTGTTGGTTGGTCTAAGAAGCTTTACAAAGAGAAGAGAATTAATGAAATACTTGATCCTGATTTAATTGTGCAATCATCTAGTGAAAGTGAACTATTTCAGTATTTGAGAATTGCCTTTGAGTGTCTAGATGAGAGGCCCTACCGTCGGCCGACCATGATACAAGTGATGGCCATGTTCAAAGAGCTTCAGGTTGACACAGATAATGATACGCTTGATAGCTTCTCTCTGAGAGACAGTTTCATTGATGAAGCATGA 3624 0.4972 MKRAKPYLRRNMSWSPTLVITSLLLIALFVAVTTAEAESEPASTSDANLLIRFKQFHVSSDPRGFLSDWLPDAPSPCAWRGVTCSPQPPRVTAIDLSGASLSGTLHLPTLTSLPSLSTLVLRGNSFSAFNLSVSPFCTLQTLDLSFNNFSGNFPFANLTPCNRLTYLNLSNNLITAGLGLGPDSGLSLAQLDLSRNLVSDVSLLVSSLASSALVYLNFSDNRLTGQLGESLVSRSANLSTLDLSHNLLSGAVPPRLVNDAVQVLDFSFNNFSRLDFSSCGSLTRLSFSRNALSGEEFPRGLSSCNRLEVLDLSRNEFEAEIPGEILRSLRSLKSLFLDRNKFFGEIPSELGSLCGSLVELDLSENMLSGALPLSFVNCSSLRSLNLARNYFSGNFLVSVVSNLQSLEYLNVAFNNITGQVPFSLVNLKRLRVLDLSSNRLNGNVPSFFCPSELEKLILAGNYLSGTVPSQLGDCKNLRTVDFSFNSLNGSIPWEVWALPNLSDLIMWANNLTGEIPEGICVKGGNLENLILNNNFISGSIPKSIANCTNMIWVSLASNRLTGAIPSGIGKLNVLAILQLGNNSLSGRIPPEIGKCGKLIWLDLNSNNLTGNIPFELADQAGLVIPGKVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPLTRIYSGWTVYTFSSNGSMIYLDLSYNLLSGTIPGNLGGMAYLQVLNMGHNRLSGNIPDSFGGLKVIGVLDLSHNSLNGSIPGSLQSLSFLSDLDVSNNNLTGSIPSGGQLTTFPASRYENNSGLCGLPLPSCSASKNRSVGVVVWKKKQPVAAGVVIGLLCFLLFALGLVLALYRVRKTQKKEEIREKYIESLPTSGSSSWKISSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVQLLGYCKVGEERLLVYEFMKWGSLEAVLHERAKGGGSNLDWGARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDEDFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGRRPIDSSEFGEDNNLVGWSKKLYKEKRINEILDPDLIVQSSSESELFQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTDNDTLDSFSLRDSFIDEA 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium138g00004 1207 Gene3D Transferase(Phosphotransferase) domain 1 984 1201 - -
Vium138g00004 1207 ProSiteProfiles Protein kinase domain profile. 908 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium138g00004 1207 Pfam Leucine Rich repeat 403 418 IPR001611 GO:0005515
Vium138g00004 1207 Pfam Leucine Rich repeat 137 151 IPR001611 GO:0005515
Vium138g00004 1207 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 452 624 - -
Vium138g00004 1207 SMART LRR_typ_2 403 426 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 236 259 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 113 136 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 759 782 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 427 450 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 354 377 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 329 353 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 498 522 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 279 304 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 711 734 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 306 328 IPR003591 -
Vium138g00004 1207 SMART LRR_typ_2 571 595 IPR003591 -
Vium138g00004 1207 SUPERFAMILY L domain-like 444 803 - -
Vium138g00004 1207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1031 1043 IPR008271 GO:0004672|GO:0006468
Vium138g00004 1207 ProSitePatterns Protein kinases ATP-binding region signature. 914 937 IPR017441 GO:0005524
Vium138g00004 1207 Pfam Brassinosteroid receptor island domain 621 685 IPR045381 -
Vium138g00004 1207 SUPERFAMILY L domain-like 45 295 - -
Vium138g00004 1207 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 683 804 - -
Vium138g00004 1207 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 399 1183 - -
Vium138g00004 1207 SUPERFAMILY Protein kinase-like (PK-like) 889 1182 IPR011009 -
Vium138g00004 1207 Pfam Leucine rich repeat 330 390 IPR001611 GO:0005515
Vium138g00004 1207 Gene3D Ribonuclease Inhibitor 186 805 IPR032675 -
Vium138g00004 1207 Gene3D - 628 685 - -
Vium138g00004 1207 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 273 451 - -
Vium138g00004 1207 FunFam serine/threonine-protein kinase BRI1-like 2 869 983 - -
Vium138g00004 1207 FunFam Brassinosteroid LRR receptor kinase 984 1187 - -
Vium138g00004 1207 Gene3D Ribonuclease Inhibitor 45 159 IPR032675 -
Vium138g00004 1207 Pfam Protein kinase domain 910 1180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium138g00004 1207 PRINTS Leucine-rich repeat signature 427 440 - -
Vium138g00004 1207 PRINTS Leucine-rich repeat signature 238 251 - -
Vium138g00004 1207 SUPERFAMILY RNI-like 271 516 - -
Vium138g00004 1207 Gene3D Phosphorylase Kinase; domain 1 871 983 - -
Vium138g00004 1207 SMART serkin_6 908 1182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium138g00004 1207 Pfam Leucine rich repeat N-terminal domain 45 85 IPR013210 -
Vium138g00004 1207 FunFam Serine/threonine-protein kinase BRI1-like 1 628 685 - -
Vium138g00004 1207 Pfam Leucine Rich Repeat 714 735 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium138g00004 Vium-Chr138 39301 43498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium138g00004 45 1206 Receptor kinase-like Gene Family AT1G55610 63.274 0.0 1441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vium138g00004 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium138g00004 - - gmx:102670093 1927.52