LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium138g00002	ATGGCTGGGATTGATGATAATGTTGCCCTTTCTGGCGATTGGGGTCTTGCTAGCCCAAGTCCAAGAACATTTTTTTCTAGAATGTTAGAGGAAGAAAATGTAACAAGATCAGTCTCAGAGCATTCTGGAAGTGGTAGAACTGGGGAATTCTTTTCAGGACCACATGAGCCTAGTGAGACAGGGAAGAGAAACATGCAGGATGCAACACAAGATGGAGATTCTGTAGCCCAATTGAGTTTTCAGACCGAGCAAAAGCCTAACTCCAGAGGTGGTCTTGTGGAAAGAATGGCTGCTAGAGCTGGGTTTAATGCTCCTAGGTTGAACACTGAAGGCATTAGATCTACTGATCTTTCACTCAATTCTGACATTCAGTCTCCTTACTTGACCATCCCACCAGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCATCTCCAACAACTGGAAAGTTTCTGTTTATGTCAAATGGCAACATGCGGCACCCTGAATTATCATCTGATGCTCCAGAAAAATGTAAAGATAATGGCTTTGATGATATCTATACATCATCCTTTGCTTTCAAGCCTGCAACAGACTCAGGCTCCTCTTTCTATCATGGGGCTGGAAGAAAAATAAATCCAACTACATTTCCTCAACAATCCCATCCTGGTATTGAGGTTTCGGCTCAGTCAGAAAATTCTTTTCATTCCCAAAGTGTTGATGCTGCCAAAGTTCAAACTGAGAACAAAAATGGTCTTCATCTTCAGGCAGACTTTGCCGAATCGCCTCCTGAAAAGGATATTAAAATGTTTCCAGCTGATCAAAGGGCTTTTGATGCTGTTGGTGGTGGCATTGAACATTCTACACCAGTTGAAGAGCATGGAGATGAAGAAGGAGATCAAAGAGCCAATGGAGATTCAGTGACTGGTGGTGTTGGGGGCGCACCATCTGATGATGGATATAACTGGAGAAAATATGGCCAAAAACAAGTGAAAGGCAGTGAGTACCCTCGAAGTTACTACAAGTGTACCCATCCAAACTGTCAGGTCAAGAAGAAAGTAGAACGATCCCACGAAGGCCACATAACTGAGATCATCTACAAGGGAACGCACAACCATCCAAAACCTCCTCCTAGTCGCCGATCAGGCATAGGTTCAGTTAACCCTCACACTGACATGCAAGTTGACAACCCTGAACATGTTGAATTACACAATGGTGGTGACGGTGACATCGGCTGGGGTAATGTACAAAAGGGAAATATAGCTGGAGCTGCTAACTGGAAGCACGATAACCTTGAAGCAACATCATCAGCATCTATTGGCCCTGAGTACTGCAACCAGTCCAATTTGCAGACGCAAAATGGTGGTACTCTTATTGATTCAGGAGAGGCAGTTGATGCCTCGTCTACTTTCTCTAACGAAGAAGATGAAGACGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGGGGAAGGAGATGAATCAGAGTCCAAGAGAAGGAAACTGGAATCATATGCAGACCTGAGTGGAGCTACTAGAGCCATCCGTGAGCCTAGAGTTGTTGTACAAACTACCAGTGAGGTAGATATCCTCGATGATGGTTATCGGTGGCGCAAGTATGGACAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACAAATGCAGGCTGCACAGTAAGGAAACATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACCACTTATGAGGGAAAGCACAACCATGATGTTCCTGCTGCTCGTGCCAGTAGCCATGTCAATGCTAACGCGTCAAATGCCAACCAAGCTTCTGGTGTTCTTCATAGCCATGTTCATAGACCGGAACCATCTCAAGTACATAATGGCATGGGAAGGCTTGAGAGGCCATCCCTCGGCTCGTTCAACCTACCTGGAAGACAGCAGCTAGCACATTCCCACGGCTTCTCCTTTGGCATGAACCAACACATGCTATCGAATCTGGCAATGTCAGGGTTAGGCCACATGCAAGCCAAGCTCCCTGTCATGCCTGTTCATCCATTCTTGGCACAGCAACAACAGCAAAGTCCTTCAAACGATTTTGGTTTCATGATGCCAAAGGGAGAGCCAAATGTAGAGGCTATTCCTGAACGTGGTGGTGGCCTTAACCTGCCAAATGGCTCATCAGTGTACCAAGAAATCATGAGTCGCATGCCCCTTGGACCTCACATGTAA	2241	0.4543	MAGIDDNVALSGDWGLASPSPRTFFSRMLEEENVTRSVSEHSGSGRTGEFFSGPHEPSETGKRNMQDATQDGDSVAQLSFQTEQKPNSRGGLVERMAARAGFNAPRLNTEGIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFMSNGNMRHPELSSDAPEKCKDNGFDDIYTSSFAFKPATDSGSSFYHGAGRKINPTTFPQQSHPGIEVSAQSENSFHSQSVDAAKVQTENKNGLHLQADFAESPPEKDIKMFPADQRAFDAVGGGIEHSTPVEEHGDEEGDQRANGDSVTGGVGGAPSDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHPKPPPSRRSGIGSVNPHTDMQVDNPEHVELHNGGDGDIGWGNVQKGNIAGAANWKHDNLEATSSASIGPEYCNQSNLQTQNGGTLIDSGEAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYADLSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNANQASGVLHSHVHRPEPSQVHNGMGRLERPSLGSFNLPGRQQLAHSHGFSFGMNQHMLSNLAMSGLGHMQAKLPVMPVHPFLAQQQQQSPSNDFGFMMPKGEPNVEAIPERGGGLNLPNGSSVYQEIMSRMPLGPHM	746

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium138g00002	746	FunFam	WRKY transcription factor 33	522	588	-	-
	Vium138g00002	746	SMART	WRKY_cls	319	377	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium138g00002	746	SMART	WRKY_cls	535	594	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium138g00002	746	ProSiteProfiles	WRKY domain profile.	530	595	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium138g00002	746	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	140	614	IPR044810	GO:0003700
	Vium138g00002	746	ProSiteProfiles	WRKY domain profile.	320	378	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium138g00002	746	MobiDBLite	consensus disorder prediction	285	326	-	-
	Vium138g00002	746	Pfam	WRKY DNA -binding domain	536	592	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium138g00002	746	Pfam	WRKY DNA -binding domain	320	376	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium138g00002	746	SUPERFAMILY	WRKY DNA-binding domain	527	595	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium138g00002	746	SUPERFAMILY	WRKY DNA-binding domain	318	378	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium138g00002	746	MobiDBLite	consensus disorder prediction	368	413	-	-
	Vium138g00002	746	Gene3D	WRKY domain	522	588	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium138g00002	746	MobiDBLite	consensus disorder prediction	1	75	-	-
	Vium138g00002	746	MobiDBLite	consensus disorder prediction	468	506	-	-
	Vium138g00002	746	Gene3D	WRKY domain	310	379	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium138g00002	746	FunFam	WRKY transcription factor	310	379	-	-
	Vium138g00002	746	MobiDBLite	consensus disorder prediction	220	244	-	-
	Vium138g00002	746	MobiDBLite	consensus disorder prediction	291	305	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium138g00002	Vium-Chr138	10620	15352	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium138g00002	1	741	WRKY Transcription Factor Family	AT5G56270	49.032	0.0	550

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vium138g00002		WRKY	3.8e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium138g00002	K18835		-	gmx:100796545	1292.72