Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1389g00017 ATGAACTCTCTCGTGGGATTTGGTTCTATAGCCGCATTCATCATTAGTTCCATCCCGCTACTTAACCCCAGCCTAGCATGGGATGCATCCTTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTGGGACGTTCTCTGGAGGAAAAGGCAAGGATCCAGGCATCTAGCGATATGAATGAACTGCTTTCACTTATATCTACTCAGTCAAGACTTGTGATTACTTCAACAGAAGGTTCTCCTTCTACTGACACTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGTGATTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGTAAGCCTTTCTGATTTCTATTGGTATTCTGTTTATCTTAAATAA 402 0.4229 MNSLVGFGSIAAFIISSIPLLNPSLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEGSPSTDTVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDVSLSDFYWYSVYLK 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1389g00017 133 Gene3D - 31 125 - -
Vium1389g00017 133 PANTHER ATP7, ISOFORM B 1 119 - -
Vium1389g00017 133 SUPERFAMILY Calcium ATPase, transduction domain A 89 126 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1389g00017 Vium-Chr1389 116298 118134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1389g00017 1 119 Primary Pumps ATPases AT5G44790 31.405 1.11e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1389g00017 K17686 - vum:124826169 251.906