Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1389g00008 ATGGAAGATAGCATGTTCAAAACTATGGCATGGTGTTTTGCCTTGCTACTTTTCTATGTCATGATTAGCTTTGTGAACACTATGTGGTGGAGACCCAGAAAAATTGAGAAATTGTTGAGGAAGCAAGGGATTAGAGGAACTTCATACAGGTTTTTTACTGGTGACACTTCAGACATGAAAGACTGTATCCAAAAGGCATTATCAAAAACTATCTCCCTTGACCATCAGATCATCCCTCGAGTCGTCCCTTTCATGCACCAAATCGTTCAGCAACATGGAAAGATTTCACTGTGTTGGTTTGGAAGAACACCAAGACTCATAATAGCAGATGCAGAGCTCACACGATCGATTTTAACAGACACGAAAGGGCACTTTTTGAAGCCACCACGTAACCCTCTCATCAATCTTCTATCGTTAGGATTGTCTTCGTTAGAAGGCGAAATTTGGAGCAAACGCAGAAGGGTGGTAAATTCAGCTTTCCACCTTGAGAAGTTGAAGGCAATGATGCCAGCATTTTCAATCAGCTGTAACAACATGATCGAGCGATGGGAGAAATTAGTAGAAGCTCGTGGATGGTATGAATTGAATGTTTGTTCAGAATTCGACATTCTTACTGGTGATGTGATAGCTCGAACAGCCTTTGGAAGTAACTACCAAGAGGGAAAGAAAATTTTAGAACTGCAAAAGGAGCAAGCAGTCTTGGTCAACGAAGCCATCAACAACATCTATATCCCAGGTTACAGATTTTTACCAACCACAAAGAACAAGCGCAGGTACAACCTAGATATCCAAATCAAAGCTATGTTACGAGATATGATACAGAAGAAAGAACAGGCAATGAAAGAGAATAAAGTGAAAGAGCATGATTTATTAAGTTCACTGCTACAGTATAGGGAAGAAAGTGGTTCTTTAACAACAGATAATGTGATTGAAGAATGCAAGTTGTTTTACTTTGCCGGCCAAGTGACCACGGCCAACTTGCTTTCATGGACTGTGATTGTTTTATCTATGCATCCAAATTGGCAAGAGAAGGCAAGAACAGAGGTGTTGAAGATTTTTGGCAAAAAAACACTTGACTACGAAGACATTAATCACCTCAAGATTGTGTCAATGATACTGTATGAAGTTTTGAGATTATACCCTCCTCTGGTAAACATCAACAAATACAGTTGCTGTGAAACAAGAGTGGGAAACATTTCCATTCCAGCAGGGGTTGAACTGTGTTTACCTTTGTTACTTCTTCATTATGACAGTAACTATTGGGATAAGCCTGAAGAGTTCAACCCAGGTAGATTCAGTGAAGGGATTTCAAAAGCTTCAAAGGATCATATCGCTTTCTATCCATTCAGTGGGGGCTCAAGAATTTGTCCTGGCCAAAACTTTGCCTTCTTAGAAGCAAAGATGGCTCTGGCTTTCATTCTTCAACACTTCTCTTTCCAACTCTCACCCACTTATGCTCATGCTCCAGCAACTTCTACTATTACTCTCACGCCACAGCATGGTGCTCCCATTATTATTCGTCGCACTTAG 1530 0.4052 MEDSMFKTMAWCFALLLFYVMISFVNTMWWRPRKIEKLLRKQGIRGTSYRFFTGDTSDMKDCIQKALSKTISLDHQIIPRVVPFMHQIVQQHGKISLCWFGRTPRLIIADAELTRSILTDTKGHFLKPPRNPLINLLSLGLSSLEGEIWSKRRRVVNSAFHLEKLKAMMPAFSISCNNMIERWEKLVEARGWYELNVCSEFDILTGDVIARTAFGSNYQEGKKILELQKEQAVLVNEAINNIYIPGYRFLPTTKNKRRYNLDIQIKAMLRDMIQKKEQAMKENKVKEHDLLSSLLQYREESGSLTTDNVIEECKLFYFAGQVTTANLLSWTVIVLSMHPNWQEKARTEVLKIFGKKTLDYEDINHLKIVSMILYEVLRLYPPLVNINKYSCCETRVGNISIPAGVELCLPLLLLHYDSNYWDKPEEFNPGRFSEGISKASKDHIAFYPFSGGSRICPGQNFAFLEAKMALAFILQHFSFQLSPTYAHAPATSTITLTPQHGAPIIIRRT 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1389g00008 509 Gene3D Cytochrome P450 29 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 PANTHER CYTOCHROME P450 FAMILY MEMBER 19 502 - -
Vium1389g00008 509 PRINTS E-class P450 group I signature 410 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 PRINTS E-class P450 group I signature 204 222 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 Coils Coil 269 289 - -
Vium1389g00008 509 SUPERFAMILY Cytochrome P450 77 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 Pfam Cytochrome P450 84 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Vium1389g00008 509 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1389g00008 509 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1389g00008 Vium-Chr1389 59337 61665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1389g00008 25 505 Cytochrome P450 AT3G14620 45.155 6.02e-153 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1389g00008 - - aip:107623710 652.514