Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1389g00004 ATGGATGCTAATTTTAAGAACCAAGGTCTTCAAGGCGGCGATGTGAGCTTGGCTGAGAAGAAAAGGGAAGTTATGGTGGCGATTCCAAATGAGGGTGGTGGTGAATCTTTGATGCCAAAGCAGCAGAGCAGGGGGAATTCGCCCCACAGAATGTTAAACGACGAGTTTTCTGTAAAGTCGCCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAGATTCCCGTTTCTAGCGCCAATCTCACCCGGAGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAGCCTTACCCTGTTGATGGGACTCTTTTAGAAGAGAATGGTACCTCAACTTTGCAAGAAAATTTCGGTGTTGGTTCACCATTTAAAGCATCGCCTATTAACAATAAACCTGGAACTATTAGTCGAACAGTCTCCATCCTTTCTGTGATCACTCCTAAGACGCCGTTGATGGCGTCTCCCGGGCCGGCTGGTGGGGAGGATTTCGATGAACTCGTTTACAGAAAAGTTGAATTGAGTAAAAGCAAACGTAGTAGAAGAGTGACAGTTAAGGTTTTGTCTGAATGGTTTGTGTTCGTGTGCATTACAAGTACCTTGGTGGCTAGTTTAACAGTTGGAAAACTTAAAAGAACGGAGATTTGGGGTTTGGGGATTTGGAGATGGTGTGTGCTTGTGATGGTGACCTTTTGCGGAATGTTGGTCACCAGATGGTTCATGCGCATTATTGTTTTCTTGATTGAGACGAACTTTTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGGGGGGTGGACCGATCTGAATTTGCCACAAAGATTTTGAATGGGGTAACATGGACTCTTACTTCCCTCCTCATTGGTGCATTCCTGTGGTTCATGAAGACATTGTTGCTCAAGATTTTGGCGTCAAATTTTCATGTTAAATCTTTCTTTGATCGAATTCAAGAAACGCTTTTCCACCAGTACATTCTGCAGACTCTCTCTGGGCCTCCACTTGTAGAAGAGGCTGAGAAGATTGGGAAATCAATCAGTGTTGGTCACTTTAGTTTCAGGAGTACAGATGGTAAGGGTGGAATGAAGAAAGAAACCATTGATATTGCGAAGCTTCACCAGATGAAACAAGAGAAGGTTTCTGCATGGACTATGAAGGTCTTGGTAGATGCAATGACAAATTCAAGGCTGTCCACAATCTCTAGTGCACTGGATGAAAGTTTTGATGATGGAGAAAATGAACAGACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCAGCCTATCACATTTTCAGGAATGTTGCTCCCCCCGGTTGCACGTACATTGACGAGGAAGAACTAAGGAGGTTCATGATTAAGGAAGAAGTGAGGATGGTATATCCCCTACTGGCTGAAGCAGAAACAGGGCAGATTACCAGGAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAGGAACGCAAAGCATTGGCACATGCCTTAAGCGACACCAAAACTGCTGTGAGACAACTAAACAAGCTCGTGACAGTAATCCTAGTAGTTGTGACCGTAATTGTGTGGCTTCTACTAATGGAGATTGCAACAACGAAAGTACTTGTGTTTCTATCTTCCCAGCTAGTACTTGCAGCTTTCATGTTTGGCAACACTTGTAAGAACATATTTGAAGCTATCATCTTCGTGTTTGTGATGCATCCGTTTGATGTTGGTGATCGATGTGTTGTTGATGGGGTTGAGCTATTGGTTGAAGAAATGAACATATTGACAACAGTCTTCTTGAAGCTTAACAATGAAAAAGTGTACTATCCAAATTCTGTCTTGGCTACGAAACCGATTAGCAACTATTACAGAAGCCCAGATATGGGTGACCGTGTAGAGTTCTCCATTGATTTTACAACACCAGCTGAGAAAATTGGGGCACTGAGAGAAAGAGTAAAGAGGTACCTGGAGAGAAACCCACAGTACTGGCACCCTAATCATGGGTTAGTAGTGAAGGAGATCGAAGACGTAAACAAAATTAAGATGGGTATAATCGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAAACAAGAGAAGAACTGAATTGGTGATGGAAATAAAGAAGATTTTTGAAGAACTCAACATCAGATACAACCTTCTTCCACAAGCCATTCATCTCAGACATATGGAGCCAGACCCTAGGGTTACATGA 2313 0.4293 MDANFKNQGLQGGDVSLAEKKREVMVAIPNEGGGESLMPKQQSRGNSPHRMLNDEFSVKSPPLNCASPEIRFMPSPNKPPKIPVSSANLTRRKSLTRSVYSKPKSRFGEQPYPVDGTLLEENGTSTLQENFGVGSPFKASPINNKPGTISRTVSILSVITPKTPLMASPGPAGGEDFDELVYRKVELSKSKRSRRVTVKVLSEWFVFVCITSTLVASLTVGKLKRTEIWGLGIWRWCVLVMVTFCGMLVTRWFMRIIVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLINRGVDRSEFATKILNGVTWTLTSLLIGAFLWFMKTLLLKILASNFHVKSFFDRIQETLFHQYILQTLSGPPLVEEAEKIGKSISVGHFSFRSTDGKGGMKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTNSRLSTISSALDESFDDGENEQTDKEITNEMEATAAAYHIFRNVAPPGCTYIDEEELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERKALAHALSDTKTAVRQLNKLVTVILVVVTVIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDRVEFSIDFTTPAEKIGALRERVKRYLERNPQYWHPNHGLVVKEIEDVNKIKMGIIVTHTMNFQEFGEKNKRRTELVMEIKKIFEELNIRYNLLPQAIHLRHMEPDPRVT 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1389g00004 770 MobiDBLite consensus disorder prediction 29 60 - -
Vium1389g00004 770 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 82 765 IPR016688 -
Vium1389g00004 770 Gene3D - 604 653 IPR023408 -
Vium1389g00004 770 Pfam Mechanosensitive ion channel 544 750 IPR006685 GO:0016020|GO:0055085
Vium1389g00004 770 PIRSF Memb_At2g17000 18 769 IPR016688 -
Vium1389g00004 770 FunFam Predicted mechanosensitive ion channel 604 653 - -
Vium1389g00004 770 SUPERFAMILY Sm-like ribonucleoproteins 594 653 IPR010920 -
Vium1389g00004 770 MobiDBLite consensus disorder prediction 94 114 - -
Vium1389g00004 770 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1389g00004 Vium-Chr1389 32792 36756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1389g00004 23 760 Mechanosensitive Ion Channel Family AT5G12080 58.221 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1389g00004 K22048 - gmx:100803107 1327.77