Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1389g00003 ATGATTATAAGACACTCTTTACCACCACATTTAGTTCTCCTCGTACATTGCCTCCTCCCACACAACATTCGAACCGACAACATGAGTCTAAGCGAGAGCCCAACCACTCGCCACAACCTCTCTCGCCAATCATCCAAGTCCAAGAGTGGTGGATGCTGTCGAGGCTTCAGCAGCGTTAGGACCGTCTCATCCACCGCACCAACCTTGCAACACCATCATCTTCAGCAGCTTTACCAAAAATTGGAACTAAAGGTGGCAGGTTTGGAAAAAGAGGTGCAGAGGCAGACAGAACTGCGCGTTATGTATAGGAAAAGAATGGAAAAGACGCAGGATTACTTGAAATACTGTCTCCAAATCGCACAGGAAAATGGAATCTTGGACCTCATTATCCACTCCAACGGTGAATTCTCGCAATCTCCCATTTCTTCTCCACGTGAACTCAACTCCACCCCCACACCATCGCACAACCATCCCAATCTAATACCCATCGTTGATCAAGCCAAAATCAATGGATGGTTCATCAACCCCAGTGAGATTCGTCTGGGAGAAAAAATAGGGCAGGGAACCACGGCGGAGATTCACAGAGGGACATGGCGCGGATGTGATGTGGCGGTGAAGTGCATGTCAGATTCATTCTTCGGCAAAAACGAAAACGGTGTCGTGTTCTTCGCTCAGGAGGTTGAAACCCTCTCGAAACAGCGTCACCGGTTTGTGCTTCACCTCATGGGTGCGTGTCTCGACCCTCCGCGTCATGCATGGGTGGTTACCGAGTATCTGAACACCACGCTCAAGGAGTGGCTACAAGGGCCGGGGAAAAGGCCCAAACACCGAACAACGCCACTCCCTCCCTTCAAAGAGAGGGTGATACGGGCCCTGGAAATAGCCCAAGCCATGCAGTACCTCCACGAACAAAAGCCCAAGGTCATTCATCGTGACTTGAAGCCCAGCAACATCTTCCTGGACGATGCGTTGCATGTGAGAGTGGCGGATTTTGGTCACGCGCGGTTCTTGGACGATGACGAAATGGCCCTCACCGGAGAAACAGGAACATACGTGTATATGGCACCGGAGGTAATTCGGTGCGAGCCCTACAATGAAAAATGTGATGTATACAGTTTTGGGATAATTCTCAACGAGTTACTTACTGGAAACTACCCTTATATAGAGACACAACTTGGTCCCGCCAAGATTGCTATGGAAGTTGTGGAAGATGAGCTAAGGCCTTTAGTTGCATCAAAGGACGATGGTGAGGAACTGGAAGAAGTGATTGACCTAATATGCCTTTGCTGGAATGCAAGCCCATCCACTCGACCATCATTCGCAACAATTACTCATACCCTCAAATCTTATGTCGAAAGGGTCCTTCTAATTTCAAATTAA 1380 0.4884 MIIRHSLPPHLVLLVHCLLPHNIRTDNMSLSESPTTRHNLSRQSSKSKSGGCCRGFSSVRTVSSTAPTLQHHHLQQLYQKLELKVAGLEKEVQRQTELRVMYRKRMEKTQDYLKYCLQIAQENGILDLIIHSNGEFSQSPISSPRELNSTPTPSHNHPNLIPIVDQAKINGWFINPSEIRLGEKIGQGTTAEIHRGTWRGCDVAVKCMSDSFFGKNENGVVFFAQEVETLSKQRHRFVLHLMGACLDPPRHAWVVTEYLNTTLKEWLQGPGKRPKHRTTPLPPFKERVIRALEIAQAMQYLHEQKPKVIHRDLKPSNIFLDDALHVRVADFGHARFLDDDEMALTGETGTYVYMAPEVIRCEPYNEKCDVYSFGIILNELLTGNYPYIETQLGPAKIAMEVVEDELRPLVASKDDGEELEEVIDLICLCWNASPSTRPSFATITHTLKSYVERVLLISN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1389g00003 459 SMART serkin_6 179 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1389g00003 459 MobiDBLite consensus disorder prediction 26 53 - -
Vium1389g00003 459 Coils Coil 71 98 - -
Vium1389g00003 459 Pfam Protein kinase domain 181 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1389g00003 459 Gene3D Phosphorylase Kinase; domain 1 167 259 - -
Vium1389g00003 459 Gene3D Transferase(Phosphotransferase) domain 1 260 455 - -
Vium1389g00003 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Vium1389g00003 459 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 53 448 - -
Vium1389g00003 459 MobiDBLite consensus disorder prediction 137 156 - -
Vium1389g00003 459 SUPERFAMILY Protein kinase-like (PK-like) 147 446 IPR011009 -
Vium1389g00003 459 ProSiteProfiles Protein kinase domain profile. 179 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1389g00003 459 ProSitePatterns Protein kinases ATP-binding region signature. 185 206 IPR017441 GO:0005524
Vium1389g00003 459 CDD STKc_MAP3K-like 185 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1389g00003 Vium-Chr1389 28364 30177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1389g00003 160 457 MAP Kinase Kinase Kinase AT2G17700 34.437 4.43e-45 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Vium1389g00003 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1389g00003 - - vum:124826171 897.886