Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13894g00003 ATGAAGGTGGTCGCAGCGTATTTACTAGCCGTTCTCGGAGGCAACCAGAGCCCCTCCGCCGCTGTTATCAAGGAAATTCTCGGCTCCGTTGGTGCCGAGGCAGATAGTGATAGGATAGAACTATTTTTATCTGAAATTAAGGGAAAGGATATAGTTGAGGTTATTGCTGCCGGTAAGGAAAAGCTTGCTTCAGTGCCCTCTGGTGGTGGTGGTGCTGTTGCTGTTGCTGCTGCGCCTGGGGGAGGTGGTGCTGCTGCTGCCCCTGCCGCTGAGGCAAAGAAAGAGGAAAAAGTCGAGGAGAAAGAGGAATCCGATGATGATATGGGTTTCAGTCTTTTCGATTAA 345 0.5072 MKVVAAYLLAVLGGNQSPSAAVIKEILGSVGAEADSDRIELFLSEIKGKDIVEVIAAGKEKLASVPSGGGGAVAVAAAPGGGGAAAAPAAEAKKEEKVEEKEESDDDMGFSLFD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13894g00003 114 Gene3D - 1 59 IPR038716 -
Vium13894g00003 114 MobiDBLite consensus disorder prediction 79 114 - -
Vium13894g00003 114 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vium13894g00003 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vium13894g00003 114 CDD Ribosomal_P2 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vium13894g00003 114 FunFam 60S acidic ribosomal protein P2 1 59 - -
Vium13894g00003 114 Pfam 60s Acidic ribosomal protein 17 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13894g00003 Vium-Chr13894 16287 17865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13894g00003 1 114 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 64.035 1.22e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13894g00003 K02943 - gmx:100499761 129.798