Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13892g00002 ATGAGTTGCAGAGAAAGGAACAAAGGGGAAAGAGAAGAGAAGGAATATGAAAATAGTTCTGTTGCATTGAAATCAAAATCAGCGAGGCAAAACATTGGTTCAATAGAAGATGAACCGCTAACAATTGATGAAAGTCTTCTGATTGACCCCAAGCTATTGTTTATTGGGTCAGAAATTGGCGAGGGAGCTCATGGAAGAGTTTATGAAGGAAGGTACAGAGAACGGATTGTTGCTATCGAAGTTCTCCATCGTGGGAGTACTTTAGAAGAAAGAGTTTCACGGGAGAATCGTTTTGCTCGCGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTGATGGTTATTGTTACAGAGATGTTACCTGGTTTGTCACTGCGAAGATATCTGATCACTATACGCCCTAAACAATTAGAGCTTTATGTGGCTATAAAGTTTGCCCTTGATATTGCTCTGGCCATGGATTGGTTACATGCCAATGGAATCATACATAGAGATCTGAAGCCTGACAATCTGCTGCTCACGGCAAACCAGAAGTCGGTTAAACTTGCTGATTTTGGCCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAAACTGGAACTTACCGTTGGATGGCACCCGAGTTGTACAGTACAGTGACATTGCGTCAAGGGGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCCGCATTTAAGCAAGAGAGGCCTAACCTTCCTGAAGACATATCTCCTGATCTTGCCTTCATCATTCAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGCATGCTTAATAAGTTCATCCTCACTCTCCAACCACCACCATTTTCAGCACCACCTGAACCGGACGACGAACCTGAGGCCGTGACAAGTAATGGCACAATAACTGACTTTTCTACGCGAAATAAAGTAAAGTTTTCATTTATTCGCCACCTTTTTTCTTCGAAGAGGACCAAAAGCTGA 1113 0.4232 MSCRERNKGEREEKEYENSSVALKSKSARQNIGSIEDEPLTIDESLLIDPKLLFIGSEIGEGAHGRVYEGRYRERIVAIEVLHRGSTLEERVSRENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTEMLPGLSLRRYLITIRPKQLELYVAIKFALDIALAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPEDISPDLAFIIQSCWVEDPNMRPSFSQIIRMLNKFILTLQPPPFSAPPEPDDEPEAVTSNGTITDFSTRNKVKFSFIRHLFSSKRTKS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13892g00002 370 MobiDBLite consensus disorder prediction 1 20 - -
Vium13892g00002 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vium13892g00002 370 FunFam Kinase suppressor of Ras 1 42 132 - -
Vium13892g00002 370 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 315 - -
Vium13892g00002 370 MobiDBLite consensus disorder prediction 325 345 - -
Vium13892g00002 370 Pfam Protein tyrosine and serine/threonine kinase 55 314 IPR001245 GO:0004672|GO:0006468
Vium13892g00002 370 ProSiteProfiles Protein kinase domain profile. 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13892g00002 370 SMART serkin_6 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13892g00002 370 MobiDBLite consensus disorder prediction 1 22 - -
Vium13892g00002 370 Gene3D Transferase(Phosphotransferase) domain 1 137 323 - -
Vium13892g00002 370 CDD STKc_MAP3K-like 59 314 - -
Vium13892g00002 370 SUPERFAMILY Protein kinase-like (PK-like) 49 332 IPR011009 -
Vium13892g00002 370 Gene3D Phosphorylase Kinase; domain 1 42 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13892g00002 Vium-Chr13892 408 7601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13892g00002 41 367 MAP Kinase Kinase Kinase AT5G01850 72.365 1.44e-176 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium13892g00002 PK_Tyr_Ser-Thr 2.1e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13892g00002 - - gmx:100816708 635.565