Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13886g00001 AGTGGAAAGAGTACACTCATAAGTGCTTTGTTTCGCTTAGTTGAGCCAGCAAGCGGTGACATTCTCATAGATGGGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAGGAACCAACTCTTTTCAAGGGCAGCATCAGAACCAACTTGGACCCTTTAGGCCTGTATTCAGATGATGAGATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCATCTTCCAAATCTCTTAGACTCTCAGGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAACGGCAACTGTTTTGTCTTGGAAGAGTACTGCTAAAGAGGAACAGAATTCTTGTTCTGGATGAAGCCACTGCCTCCATTGACTCTGCCACAGATGCAATTCTACAAAGAATTATCAGACAAGAGTTTGAAGCATGCACAGTTATTACAGTGGCTCACAGGGTTCCCACTGTTATAGACAGTGATATGGTTATGGTCCTCTCCTATGGGAAAATGGTGGAATATGATGAGCCTTCGAGACTAATGGACACCAATTCTTCATTTTCTAAGCTGGTAGCTGAATATTGGGCCAGCTGCAACAAGAATTCCTCCTAA 624 0.4295 SGKSTLISALFRLVEPASGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETISHLPNLLDSQVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFEACTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSRLMDTNSSFSKLVAEYWASCNKNSS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13886g00001 207 CDD ABCC_MRP_domain2 1 181 - -
Vium13886g00001 207 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 199 - -
Vium13886g00001 207 FunFam ATP-binding cassette (ABC) transporter, putative 1 197 - -
Vium13886g00001 207 Gene3D - 1 205 IPR027417 -
Vium13886g00001 207 Pfam ABC transporter 1 128 IPR003439 GO:0005524
Vium13886g00001 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 196 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13886g00001 Vium-Chr13886 4 1128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13886g00001 1 195 Calmodulin-binding Proteins AT2G36910 34.673 4.31e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13886g00001 - - vum:124842621 405.986