Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13870g00001 ATGAACACATTTTCGCATGTACCTCCAGGCTTTCGGTTTCATCCGACCGATGAAGAACTGGTAGGTTACTACCTTAGGAAGAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTAGATCTCTATAAGATTGAACCATGGGATCTCCAAGAGTTATGCAAAATAGGAACAGATGAACAAAGTGACTGGTATTTCTTCAGTCATAAAGATAAGAAATACCCAACTGGAACTCGCACGAATAGAGCTACAAAAGCAGGATTTTGGAAAGCGACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTGATTGGCATGAGAAAGACTCTTGTGTTTTACAAAGGAAGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGGCTAGAAACTAATGAAAATGGAACTCCTCCGGAAGAAGGATGGGTTGTGTGTAGAGTGTTCAAGAAGCGAATGACTACAATGCAGAAAGTGGGAGAATATGATCAGTCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATTTTGAATCCCCAAGGCGCATTTCCCAGCCTTATGCATCATACCATCAGCACCACCCATGCAAACCTGAGCTCATGGAATTGCAATACAACAACATACCCCACGATGCATTCCTCCAACTTCCGCAACTTGAAAGCCCCAAACTAACTCACTCAGCACCCAGTTTGAGTTGCAGCTCAGTTGTCCCTTTTGCTTATGAAACCAGCAACAACAAAAACAACGGAAGCACCTTGCAGTTCTCATCACTCTCTCAGGAAGAACAGATACAATACTGCCACCAACAAAGTCAAAATTCCCTCTATGATAATGCGGTTGACCAAGTCACAGATTGGCGAGTGCTTGACAAATTTGTTGCTTCTCAGCTTAGTCACAACCAAGATGTTTCCAAGGAGACCAGTTATTCCAATGCACCTATTTTCCAAGTGGCTGAACAAATTTCTGTGGTAACCAATGGATCCAAAAAGGAGCAAATTTCTCAGGAATATGCTTCAACATCTACCTCCAGTTGCCAGATTGACCTGTGGAAGTGA 1077 0.4299 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPPEEGWVVCRVFKKRMTTMQKVGEYDQSPCWYDEQVSFMQDFESPRRISQPYASYHQHHPCKPELMELQYNNIPHDAFLQLPQLESPKLTHSAPSLSCSSVVPFAYETSNNKNNGSTLQFSSLSQEEQIQYCHQQSQNSLYDNAVDQVTDWRVLDKFVASQLSHNQDVSKETSYSNAPIFQVAEQISVVTNGSKKEQISQEYASTSTSSCQIDLWK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13870g00001 358 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vium13870g00001 358 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vium13870g00001 358 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Vium13870g00001 358 FunFam NAC domain-containing protein 16 160 - -
Vium13870g00001 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 298 - -
Vium13870g00001 358 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13870g00001 Vium-Chr13870 10559 16630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13870g00001 1 356 NAC Transcription Factor Family AT1G62700 54.657 1.74e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium13870g00001 NAM 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13870g00001 - - gmx:100783529 652.514