Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13867g00001 ATGACTGACGTTGCCGGAGAAGCTCCCGTGCCCGCTACCACCGTGGAAAAGCCGCTGGAGGAGGTGAAGGCGGCGAAGGCGGCGAAGGAGAAGAAAACTAAGGCTCCGAAAGAGAAGAAGCCGAAACAGGCTAAAACTGCTGCGCATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGGTGGCGCTGAACGAGAAAGGAGGATCGAGCCCTTATGCTATAGCGAAGTACATGGAGGAGAAGCACAAGTCGGTGCTCCCCGCGAATTTCAAGAAGATTCTAGGTCTGCAATTGAAGAACCAAGCCGCGAGAGGAAAACTCGTGAAGATCAAGGCCTCGTACAAGCTATCCGAAACCGCAAAGAAGGAGAAGGAGACGAAGGCCAACGCTGAGAAGAAAGAATCGCGTCCGAAACGTAGCAGTAGAGCAACCACCGCTGCTCCGACGAGCAAGAAAACTGAGTCGGTTAAAAAGGCCGGAAAGAAGGCTGGGCCGAAGAAGACTAAGAAGGTGTCGACTCCCGCGAAGCCCAAACAGCCCAGGTCCATTCGGTCTCCGTCCAAGAGGGCCCGGAAGGCCACCGTTACTGCCGCTTGA 597 0.5427 MTDVAGEAPVPATTVEKPLEEVKAAKAAKEKKTKAPKEKKPKQAKTAAHPPYFQMIKEALVALNEKGGSSPYAIAKYMEEKHKSVLPANFKKILGLQLKNQAARGKLVKIKASYKLSETAKKEKETKANAEKKESRPKRSSRATTAAPTSKKTESVKKAGKKAGPKKTKKVSTPAKPKQPRSIRSPSKRARKATVTAA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13867g00001 198 Gene3D - 43 130 IPR036388 -
Vium13867g00001 198 CDD H15 46 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium13867g00001 198 FunFam Histone H1 44 136 - -
Vium13867g00001 198 MobiDBLite consensus disorder prediction 19 34 - -
Vium13867g00001 198 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium13867g00001 198 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium13867g00001 198 PRINTS Histone H5 signature 132 146 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium13867g00001 198 PRINTS Histone H5 signature 169 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium13867g00001 198 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium13867g00001 198 MobiDBLite consensus disorder prediction 115 140 - -
Vium13867g00001 198 MobiDBLite consensus disorder prediction 114 198 - -
Vium13867g00001 198 PANTHER HISTONE H1 24 181 - -
Vium13867g00001 198 MobiDBLite consensus disorder prediction 1 50 - -
Vium13867g00001 198 Pfam linker histone H1 and H5 family 49 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium13867g00001 198 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium13867g00001 198 SUPERFAMILY "Winged helix" DNA-binding domain 45 129 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13867g00001 Vium-Chr13867 1097 2047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13867g00001 36 116 Single Myb Histone (SMH) Gene Family AT1G72740 38.272 2.11e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13867g00001 K11275 - gmx:100500169 244.973