Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1385g00023 ATGATCACTGATGTGCCCCCATCTATGGTTCAAAATGGTAGGTCAAGTAGATATTCCTTTGGCTCTAGCAATGGCAATGATGATACCCCTTCACACAACGGTGCTGCTGTTGTCAATGTTGATGACTATGATAGTGATAGCTCCAATTTTGCCCCACCCACGCCATCAACTATGTCAATGGCTGTTCCAGCAGAGCTCGCTGGAGCTGTACCCTTGATCAACAGATTCCAGGTGGACGGATTTTTAAAATTGATGCAGAAGCAAATTCAATCTGCTGGGAAACGTGGATTTTTTTCTAAAAGATCTGTAGGTCCTCAAGTTCGAGAAAAAGTTACGTTTGAGGACATGCTGAGTTTTCAAAAGGATCCAATTCCAACATCATTGCTCAAGTTAAATGTTGATTTAGTAAGCCGGGCGATAAAATTATTCCAAATAATTTTGAAATATATGGGAATTGATCCATCTGATCGAGTAACTCCTATAAGCTTAGATGAACGGGTTGAGCTTGTAGGGAAACTGTACAAGCAAAATTTGAAACGACCAGAACTTCGAGATGAACTTTTTGTTCAGATATCAAAGCAGACAAGAAATAACCCTGAGAGGCAATACTTGATTAAAGCATGGGAGCTGATGTATTTATGTGCATCCTCAATGTCTCCTAGTAAAGACATTAGCACTTACCTATCAGAATACATTCATAACGTAGCAAATGGTGTGGCTACTGATTCTGAGATCCAAGTCCTTGCATTAAATTCATTAAATGCTTTGAATCATTCTGTCAAGGCTGGTCCCAGACACATAATTCCTGGGCGTGAGGAGATTGAAGCTCTGTTGACCGGGAGAAAGCTTACAACAATAGTGTTCTTTCTAGATGAAACATTTGAAGAAATTGCATATGACATGTCAACCACAGTTTCTGATGCTGTTCAGGAACTTGCAGGGCTCATTAAACTATCAGCATACTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATCTTGGGAATGAGGAGTACATTGGGTTAGATGAAAACAAATATATTGGGGATCTGCTGGCAGAATTCAAAGTTGCAAAGGATCGAAGTAAAGGAGAAATCTTGCACTGTAAATTGATATTCAAGAAAAAGTTATTTCGGGAGTCAGATGAAGCTGTGACAGAACCAATGTTTTTGCAATTGTCTTACGTACAATTGCAACATGATTATATTTTGGGCAATTACCCTATTGGAAGAGATGATGCCGCTCAGCTTTCTGCTCTACAAATCTTGGCAGAGATTGGTTTTCTTAGCACACCAGAATCATGCACTGACTGGAATTCACTTCTGGAACGTTACCTGCCAAGACAAATTTCAATGACACGAGCAAAACGGGAATGGGAGTATGACATTATTTCTCGTTATTGTTCATTGGAAAATCTGACAAAAGATGATGCGCGGCAACAATTTCTGCGTATATTGAGAGCACTTCCTTACGGAAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGACCCTATTGGACTCTTACCTGGTCGAATAATTTTGGGAATTAATAAAAGAGGGATTCATTTTTTTCGCCCAGTTCCTAAGGAATATTTGCACTCAGCTGAGTTGAGAGACATAATGCAATTTGGGAGCAGCAATACTGCGGTCTTTTTTAAAATGAGAGTTGCAGGAGTTCTCCATATATTCCAGTTTGAAACCAAGCAGGGAGAGGAAATTTGTGTTGCTCTTCAGACTCATATAAATGATGTAATGCTGCGCCGCTATTCGAAAGCACGATCTGCTGCTGGTGCTGGTTCTTTGAATGGAGCTATTCCTAATAATTCTTCTAAACCTCCAAATATGGAATTATATGAGAAGCATGTTCAAGACTTGTCAAAACTAATTGAAGAATCTCAGAAAAATGCTGATCAATTGCTTGAAGAATTACGTGTGAAGCAAAGACAAGAAGAGAAAATGCAAGAAGAATTGGACAGCTTGAAAGAATCCTTAAAATCTGATAAGCAAAATCTAGATTCTGTTACAAGTGACCGGGATAGACTTAGATCAGTATGCTATGAAAAAGATAAGGAACTACAGGCTGCTATTCTAGACAAAAGGAATATGGAATCCAGGATGGCCAAGTTAAGTAATGCGGTGATAGAGAAAACTGCCAAAAAGGATCTTGCTGATGCTGGAAATAGACAAGTGACTCAAAAGCTTGAAGATGAGCTAAAAGTTTGTAAATATGAGCTGTTTGCAGCCAATGAAACTATCAAAAGCTTGAAAAGTGAAATAATGATTTTGGAACAGAATTTATCGGCGCTTGAAAAGAGGAATGCTGGAGAGATTAGTTCCCTTCAATGGAAACTTGAGCAAGAACGCAAAGTTGTTAAGTCTGAAGCGAACGAGCTTGAAAGAAAGCTAGAAGGGTGTAGGCAAGAATTATTGGCTGCTAAGGCAACTATTTCAGCCAAGGACTCTGACTTGGTTTCAATGCAAAATAATTTGAAGGAACTAGAAGAATTGAGAGAAATGAAAGAGGATATTGATAGAAAGAATGAACAGACAGCTGCCATACTGAAAATGCAAGGGGCGCAACTAGCTGAAATGGAAACACTTTATAAGGAAGAACAAGTTTTAAGGAAGCGCTATTTTAATGTCATAGAAGACATGAAAGGCAAGATTAGAGTTTACTGTCGACTAAGGCCTCTCAATGAAAAAGAGATCGCTGAGAAAGAAAGAAAAGTTCTCACTGCAGTAGATGAGTTTACAGTGGAATATCCATGGAAAGATGACAAGCCAAAGCAGAACATATATGACCGTGTTTTTGATGGTGTTGCAACTCAAGAAAGTGTATTTGAGGATACAAAGTATTTGGTGCAGTCTGCTGTAGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATCAGACAACAACCCTGGGCTTACTCCTCGGGCAATTGCAGAACTTTTTAGAATTTTAAGAAGAGATAATAACAAGTACTCTTTTTCCTTGAAGGCATACATGGTGGAATTGTATCAAGATACCCTCATAGATCTTTTGGCACCAAAGAATGGAAAACATTTAAAATTGGATATCAAGAAGGATTCAACGGGAATGGTAGTTGTGGAAAATGTGACAATTATGTCAATTTCTACAATTGAAGAACTGAACAATATAATTCAAAGAGGATCTGAGCGGCGACATATATCAGGAACCCAAATGAATGATGAAAGTTCAAGATCTCATCTCATTCTATCAATTGTAATTGAAAGTACCAACCTTCAAAGCCAGTCGGTTGCAAGGGGAAAGCTGAGTTTTGTGGACCTTGCTGGTTCAGAACGAGTGAAAAAGTCAGGTTCTACGGGGAGTCAGCTGAAGGAAGCTCAGAGCATTAACAAGTCATTATCAGCACTTGCAGATGTTATCAGTGCTTTGTCTTCTGGTGGTCAACACACACCATACAGGAATCACAAGTTAACCATGTTGATGAGTGATTCACTCGGTGGTAATGCCAAAACTCTGATGTTTGTGAATGTTTCTCCAGCAGAATCAAATTTGGATGAGACACATAACTCTCTCATGTATGCATCCCGAGTAAGATCCATTGTGAATGACCCCAGCAAGAATGTTTCTTCAAAGGAGATAGCAAGGCTGAAGAAGTTGGTTGCATATTGGAAACAGCAAGCTGGTAAAGGACCCGAGTTTGAAGACTTAGAAGAAATTCAAGATGAAAGGCCAACTAAAGAGAATGGTAATGGCAATAGGTAA 3813 0.3897 MITDVPPSMVQNGRSSRYSFGSSNGNDDTPSHNGAAVVNVDDYDSDSSNFAPPTPSTMSMAVPAELAGAVPLINRFQVDGFLKLMQKQIQSAGKRGFFSKRSVGPQVREKVTFEDMLSFQKDPIPTSLLKLNVDLVSRAIKLFQIILKYMGIDPSDRVTPISLDERVELVGKLYKQNLKRPELRDELFVQISKQTRNNPERQYLIKAWELMYLCASSMSPSKDISTYLSEYIHNVANGVATDSEIQVLALNSLNALNHSVKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEIAYDMSTTVSDAVQELAGLIKLSAYSSFSLFECRKVVTGSKAPDLGNEEYIGLDENKYIGDLLAEFKVAKDRSKGEILHCKLIFKKKLFRESDEAVTEPMFLQLSYVQLQHDYILGNYPIGRDDAAQLSALQILAEIGFLSTPESCTDWNSLLERYLPRQISMTRAKREWEYDIISRYCSLENLTKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGLLPGRIILGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSAAGAGSLNGAIPNNSSKPPNMELYEKHVQDLSKLIEESQKNADQLLEELRVKQRQEEKMQEELDSLKESLKSDKQNLDSVTSDRDRLRSVCYEKDKELQAAILDKRNMESRMAKLSNAVIEKTAKKDLADAGNRQVTQKLEDELKVCKYELFAANETIKSLKSEIMILEQNLSALEKRNAGEISSLQWKLEQERKVVKSEANELERKLEGCRQELLAAKATISAKDSDLVSMQNNLKELEELREMKEDIDRKNEQTAAILKMQGAQLAEMETLYKEEQVLRKRYFNVIEDMKGKIRVYCRLRPLNEKEIAEKERKVLTAVDEFTVEYPWKDDKPKQNIYDRVFDGVATQESVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSDNNPGLTPRAIAELFRILRRDNNKYSFSLKAYMVELYQDTLIDLLAPKNGKHLKLDIKKDSTGMVVVENVTIMSISTIEELNNIIQRGSERRHISGTQMNDESSRSHLILSIVIESTNLQSQSVARGKLSFVDLAGSERVKKSGSTGSQLKEAQSINKSLSALADVISALSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETHNSLMYASRVRSIVNDPSKNVSSKEIARLKKLVAYWKQQAGKGPEFEDLEEIQDERPTKENGNGNR 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1385g00023 1270 Coils Coil 700 720 - -
Vium1385g00023 1270 Coils Coil 789 861 - -
Vium1385g00023 1270 MobiDBLite consensus disorder prediction 1247 1270 - -
Vium1385g00023 1270 Gene3D - 395 496 IPR014352 -
Vium1385g00023 1270 Gene3D - 501 609 IPR011993 -
Vium1385g00023 1270 Pfam Kinesin motor domain 902 1217 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1385g00023 1270 MobiDBLite consensus disorder prediction 1 39 - -
Vium1385g00023 1270 FunFam Kinesin-like calmodulin-binding protein 840 1219 - -
Vium1385g00023 1270 ProSiteProfiles Kinesin motor domain profile. 896 1217 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1385g00023 1270 PANTHER MYOSIN VII, XV 10 902 - -
Vium1385g00023 1270 SMART kinesin_4 894 1225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1385g00023 1270 MobiDBLite consensus disorder prediction 1 33 - -
Vium1385g00023 1270 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 501 610 - -
Vium1385g00023 1270 SMART MyTH4_1 119 278 IPR000857 GO:0005856
Vium1385g00023 1270 MobiDBLite consensus disorder prediction 662 681 - -
Vium1385g00023 1270 Pfam MyTH4 domain 172 276 IPR000857 GO:0005856
Vium1385g00023 1270 FunFam Kinesin-like calmodulin binding protein 386 497 - -
Vium1385g00023 1270 Coils Coil 623 685 - -
Vium1385g00023 1270 SUPERFAMILY Prismane protein-like 839 900 IPR011254 GO:0003824|GO:0016491
Vium1385g00023 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 896 1244 IPR027417 -
Vium1385g00023 1270 Gene3D MyTH4 domain 98 280 IPR038185 -
Vium1385g00023 1270 MobiDBLite consensus disorder prediction 1244 1270 - -
Vium1385g00023 1270 ProSiteProfiles FERM domain profile. 283 597 IPR000299 GO:0005856
Vium1385g00023 1270 SMART B41_5 279 503 IPR019749 -
Vium1385g00023 1270 SUPERFAMILY Second domain of FERM 381 498 IPR035963 -
Vium1385g00023 1270 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 98 280 - -
Vium1385g00023 1270 ProSitePatterns Kinesin motor domain signature. 1117 1128 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium1385g00023 1270 Gene3D - 1220 1267 - -
Vium1385g00023 1270 SUPERFAMILY PH domain-like 503 591 - -
Vium1385g00023 1270 CDD FERM_C_KCBP 500 608 - -
Vium1385g00023 1270 CDD KISc_C_terminal 894 1219 - -
Vium1385g00023 1270 Gene3D - 282 386 - -
Vium1385g00023 1270 PRINTS Kinesin heavy chain signature 1118 1136 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1385g00023 1270 PRINTS Kinesin heavy chain signature 1167 1188 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1385g00023 1270 PRINTS Kinesin heavy chain signature 968 989 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1385g00023 1270 PRINTS Kinesin heavy chain signature 1087 1104 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1385g00023 1270 Gene3D Kinesin motor domain 837 1218 IPR036961 -
Vium1385g00023 1270 Coils Coil 753 780 - -
Vium1385g00023 1270 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 282 385 - -
Vium1385g00023 1270 Pfam FERM central domain 389 503 IPR019748 -
Vium1385g00023 1270 CDD FERM_B-lobe 398 496 IPR019748 -
Vium1385g00023 1270 ProSiteProfiles MyTH4 domain profile. 119 278 IPR000857 GO:0005856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1385g00023 Vium-Chr1385 168324 178184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1385g00023 51 1267 Calmodulin-binding Proteins AT5G65930 73.810 0.0 1818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1385g00023 - - gmx:100807481 2283.83