Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1385g00018 ATGTTTACGTGTATAGCGTGTACGAAGCAAACGACGGATGAGAGGGAGGAAGAAGGAGGAGTCCGTGAGAGTGGCACGCCGAGTACAAAAGAAGCTGTCAAAAGCCTGACCACACAGATAAAGGATATGGCACTGAAGTTTTCAGGTGCTTACAAACAATGCAAACCCTGCACAGGGTCCAGTAGCTACAAGAAAGGACATAGACCATATCCAGACTTCGATACCATCTCAGAAGGGGTTCCATACCCTTACATTGGGGGTGCAAGCTCAAGTTCAACCCCCGCTTGGGACTTCACAACCTCTCACTACCCTGGTGGTAGATCAGACCCACGATTTGCTGGGGCATTTGGTGGTGACCGCACGCCTAGAGGACGAGACTCAGCATCAGTTTGTGATGTAGTCTTAGAGGACGAGGATGAGCCTAAGGAGTGGATGGCAGTGGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGGGGAAATGATCTTAAAAGAATTCGCTTCAGCCGAGAGATGTTTAATAAATGGCAAGCGCAAAGATGGTGGGGTGAGAATTACGACAGAATCATGGAACTTTATAACGTGCAGAGATTTAATCGACAGGCGCTCAACACTCCTCCAAGGTCTGAGGACGAGCCAAGAGATTCTACCTTCTCAAGATTGACATCTGCACAAGAAAGTCCCATGCCGTCAAACAAGGATTGGACCCCCAGGAGTCACTATAAACCTTCTGGGAGCAGAGGATATTACCCCTCTGAACCGTTGGATCATGGTGGAGGTGGTGGCCACTTGCATGCTGGGCCATCTATGGAACCAGCAAGGGATACTACTGCTTCTAGAGATGAGCCTTCTATCAGCAATGCCAGTGAAATGGAGGCAGAATGGGTAGAACAAGATGAGCCTGGGGTTTACATTACAATCCGGCAGTTAGCTGATGGGACCAGGGAGCTTCGACGTGTCAGATTCAGCCGGGAAAGATTTGGTGAGGTGAATGCGAAAACATGGTGGGAAGAAAACAGAGAGAGAATACAAGCTCAATACCTTTGA 1056 0.4877 MFTCIACTKQTTDEREEEGGVRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTSHYPGGRSDPRFAGAFGGDRTPRGRDSASVCDVVLEDEDEPKEWMAVVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTFSRLTSAQESPMPSNKDWTPRSHYKPSGSRGYYPSEPLDHGGGGGHLHAGPSMEPARDTTASRDEPSISNASEMEAEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1385g00018 351 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 351 IPR044532 -
Vium1385g00018 351 Pfam Transcription factor regulating root and shoot growth via Pin3 295 350 IPR013591 -
Vium1385g00018 351 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Vium1385g00018 351 MobiDBLite consensus disorder prediction 13 32 - -
Vium1385g00018 351 Pfam Transcription factor BRX N-terminal domain 24 57 IPR027988 -
Vium1385g00018 351 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Vium1385g00018 351 MobiDBLite consensus disorder prediction 221 242 - -
Vium1385g00018 351 MobiDBLite consensus disorder prediction 206 294 - -
Vium1385g00018 351 ProSiteProfiles BRX domain profile. 296 351 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1385g00018 Vium-Chr1385 114758 120505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1385g00018 1 351 Major Intrinsic Protein MIP AT1G31880 68.889 4.00e-169 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1385g00018 - - ccaj:109789470 688.723