Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1385g00014 ATGATCGGCACAGTGTACTCAATGCTTGTTTCTTCTGAGACCAGTGCAGCATCTTTGGGGAACACGTATGAGTACAAGTTAATTAAAGAAGTTGGTGATGGAACGTTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTGTTGCAATAAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTAAGAGAAGTCAAGTCGCTGCGAAAAATGAACCACCCAAATATTGTCAAGCTGAAGGAAGTTATTCGAGAATGTGACACTCTGTGCCTTGTTTTTGAGTATATGGAATACAACCTGTACCAACAAATGAAAAACAGGGAAAAACTGTTTTCTGAAGGTGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATACTTTCACCGTGATCTGAAGCCAGAAAACTTGCTGGTCACCAAGGATGTCATTAAGATTGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAGCCACCCTATACTGAGTATGTCTCCACACGGTGGTATCGTGCTCCTGAAGTCCTACTTCAGTCCCATTTATATGGATCTAAAGTCGATATGTGGGCAATGGGTGCTATTATGGCTGAGTTGTTCACTCTACGTCCTCTATTCCCCGGTACTAGTGAAGCGGATGAAATCTACAAAATATGCAGTGTAATAGGTAGTCCCACAACTGAATCTTGGGCAGATGGACTCAAGCTTGCCAGGGATATCAACTATCAGTTTCCACAGCTTGCTAGTGTACATCTCTCTGCTCTGATCCCATCCAGAAGTGATAGTGCAATTAACCTTGTTAGCTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCATCAGAGGCCCTTCAACATCCTTTCTTTCAGAGTTGCTTTTACATCCCTCCATCCCTTCGCACAAGAGCTGTGGCCAGAACTCCTCCATCTGCTGGGACCAGGGGTTCACTGGACCGTCAGGGACTCAAGAGATACTCTAGTGCTTTGCCTAATACAAAATTCACAAACAATTTTTCTTCCCCTAAATTACATGCTTCTATAGCTTCAGGTGTGCAACGGAAGTTGGATTTGGCAACCGAGGATGGAATTAAGAGCAAGAAGTCATTGAAGACTACTCAACAATCAAAATATCGATTTCCAGGAAAAGACAGCCCGACTTCTATGAACAAGGGAAGGACTGCACGCGGGGTTTCAGAAAGCGCCGAAAAGTTGGCCAATATGTCCATCGGTTCGCGAAGACAGTCGATGGGACAAAGCCGTCCATCGCCTGCAATGAAGGCGGGAGTCAATTGTATATCTGAATCTGGAAACTTCATACTCAGATCCGGACAACAAAATCCAACAACTGAGAGAAGTTTGACTAGAAAAGTTGCTGGCTGA 1425 0.4393 MIGTVYSMLVSSETSAASLGNTYEYKLIKEVGDGTFGSVWRAINKQSGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRECDTLCLVFEYMEYNLYQQMKNREKLFSEGEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDVIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSHLYGSKVDMWAMGAIMAELFTLRPLFPGTSEADEIYKICSVIGSPTTESWADGLKLARDINYQFPQLASVHLSALIPSRSDSAINLVSSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRTRAVARTPPSAGTRGSLDRQGLKRYSSALPNTKFTNNFSSPKLHASIASGVQRKLDLATEDGIKSKKSLKTTQQSKYRFPGKDSPTSMNKGRTARGVSESAEKLANMSIGSRRQSMGQSRPSPAMKAGVNCISESGNFILRSGQQNPTTERSLTRKVAG 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1385g00014 474 MobiDBLite consensus disorder prediction 382 474 - -
Vium1385g00014 474 Gene3D Transferase(Phosphotransferase) domain 1 105 310 - -
Vium1385g00014 474 MobiDBLite consensus disorder prediction 383 409 - -
Vium1385g00014 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vium1385g00014 474 ProSiteProfiles Protein kinase domain profile. 25 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1385g00014 474 Gene3D Phosphorylase Kinase; domain 1 15 104 - -
Vium1385g00014 474 Pfam Protein kinase domain 25 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1385g00014 474 FunFam serine/threonine-protein kinase MAK isoform X1 22 104 - -
Vium1385g00014 474 CDD STKc_MAK_like 25 304 - -
Vium1385g00014 474 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 365 - -
Vium1385g00014 474 SUPERFAMILY Protein kinase-like (PK-like) 22 308 IPR011009 -
Vium1385g00014 474 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vium1385g00014 474 MobiDBLite consensus disorder prediction 450 468 - -
Vium1385g00014 474 SMART serkin_6 25 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1385g00014 474 FunFam serine/threonine-protein kinase MAK isoform X1 105 314 - -
Vium1385g00014 474 MobiDBLite consensus disorder prediction 419 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1385g00014 Vium-Chr1385 105404 112682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1385g00014 24 311 Core Cell Cycle Gene Families AT3G48750 36.271 3.58e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vium1385g00014 Pkinase 2.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1385g00014 K08829 - gmx:100784474 831.247