Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1385g00013 ATGGAGAAATCAAGGTCTTCAGACCAAGTCGTTCTCTTCATCGACCAACATAATCCTAAACCATCATCCATGGAAGCAGAAAATCATCAAGAAAAACCCAGACACCCCATAAAAGTAAAAACCCTTAACCGTCTCAACTTCTCAAAACCCAAATCCCGAATCCAAGAGTACAACTATGTTCCCCGGAACAAGCTTGCAGCCTCTAAAGAAGAAGAAGATGACATTATCCAACCCACCTACAAGCTCACTTCCAACGAAGAAGACGACGACGAAGATGACTGGAAATGGGACAAGGAAGAGATGGAAGAGGATGGCTCAGAGCATAGCACAAAATTGCACCAGAAGAAGAAGTTCAGAGTCAAGTGGAGGCTCTTGATGGAGTGGGCTTTGTTCCTCAATATATTGTCATCCTTGGTGTGTTCTTTGACCATATCTTCCATAACCAACATGCACGTACTGGGATTGGAGATTTGGAGGTGGTGTGTCATGGCAATGGTTACATTCAGTGGTCGTCTGGTTTCAGGGTGGCTAGTTGGTGTGATAGTGTTCTTCCTTGAACGAAACTTCATGCTAAGGGATAAGGTGCTGTACTTCATCTACGGGCTTAGGAAGAGCATAAGAAACTGTTTGTGGCTAGGCCTTGTGTTACTCTCCTACTGGAGCCTGGTATTCGACGATGTCCAGAAGAAGAACCACAAGTTTCTGAACAAGATGTTTCAGGCGTTGGTGGCAGTTCTGGTGGGCGCAACCATTTGGCTGGTGAAGATCGTGCTGGTGAAGATGCTGGCTTCTTCGTTCCACGTGACCACGTACTTTGACAGAATGAAGGAGAGTGTTTTCCACCACTACATTTTGGATACTTTGTCGGGTCCGCCGATGCAAGACGCGGAGGAGATATTGCGGCAGCACCACCTGACGGGGTCGAAGTCGATGCCTGCGAGGATGAAGATGAAGGAGGCGAAGAACTTGTACAAGTCGAAGAGATTTGGGTCGAGGAAGATCGACATGGAGAAGCTGAGAGAGCTCAGCATGGAGAGCCCTTCGTCTGCATGGAGTGTGAAGAGACTTGTTAACTATGTCAGATCTTCTGGCTTGTCCACCATTTCCAGAACTGTGGATGATTTTGGCAATGCCGAGTCTGAGATCAATAGTGAGTGGGAAGCTAGAAACTGTGCTCAGAGGATTTTCAAGAACGTTGCCAAGCCTGATGCCAAGTATATTGAAGAAGATGATCTGATGAGATTTTTGAAGAGGGTTGAGATACACACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACAGGACAGATAAGCAGGTCTTCATTCAGAAATTGGGTGATTCGAGCATATTATGAACGAAAAGCCCTAGCACAGTCACTGAATGATACGAAAACAGCAGTGCAACAGCTTCACAAAATAGCAAGTGCAATTGTCAGTGTGATAATAATCATTGTGATGCTTTTGCTGATGGAGGTGGCCACTCTCAAGATTATATTGTTCTGCATAACACAAACAGTTCTCATAGGTGTTGCCTTCCAAGGTACCTGCAAGACTGTGCTGGAAGCCATAATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGAGACCGATGCGTCATTGATGGAGTTCATATGATCGTAGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAACGAGAAAATTTACTACCCTAATGCAGTTTTGCTCTCTAAGCCAATAAGCAACTTCTATAGGAGTCCAGATATGAGTGATGCAATTGATTTCACCATCGATGTTTCAACTTCCATGGAGACCATCCTTGCCCTCAAGAAATCAATACAGATGTACATTGAGAGCAAACCCAAGTATTGGAATCCAAAATACAGTTTGGTAGCCAAAGGAATAGAGAATGTGGACAAGCTAAAGTTTGCGCTATGTGTGCAACACACTATCAACCATCAGAACTATGGTGAGAGAAACGTTAGGATAACTGAGCTTCTGTTGGAACTGAAGAGGATCTTTGAGATCCATGGTGTGAAGTATCATCTTCTTCCTCAGGAGATTCAGATCACCCATATGAATATTGAACATGGCAAAGTTCTGTTTCAATCATGA 2106 0.4397 MEKSRSSDQVVLFIDQHNPKPSSMEAENHQEKPRHPIKVKTLNRLNFSKPKSRIQEYNYVPRNKLAASKEEEDDIIQPTYKLTSNEEDDDEDDWKWDKEEMEEDGSEHSTKLHQKKKFRVKWRLLMEWALFLNILSSLVCSLTISSITNMHVLGLEIWRWCVMAMVTFSGRLVSGWLVGVIVFFLERNFMLRDKVLYFIYGLRKSIRNCLWLGLVLLSYWSLVFDDVQKKNHKFLNKMFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDTLSGPPMQDAEEILRQHHLTGSKSMPARMKMKEAKNLYKSKRFGSRKIDMEKLRELSMESPSSAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEINSEWEARNCAQRIFKNVAKPDAKYIEEDDLMRFLKRVEIHTIFPLFEGALETGQISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAIVSVIIIIVMLLLMEVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPDMSDAIDFTIDVSTSMETILALKKSIQMYIESKPKYWNPKYSLVAKGIENVDKLKFALCVQHTINHQNYGERNVRITELLLELKRIFEIHGVKYHLLPQEIQITHMNIEHGKVLFQS 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1385g00013 701 MobiDBLite consensus disorder prediction 1 37 - -
Vium1385g00013 701 Gene3D - 531 580 IPR023408 -
Vium1385g00013 701 PIRSF Memb_At2g17000 14 699 IPR016688 -
Vium1385g00013 701 Pfam Mechanosensitive ion channel 472 677 IPR006685 GO:0016020|GO:0055085
Vium1385g00013 701 MobiDBLite consensus disorder prediction 22 37 - -
Vium1385g00013 701 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 30 691 IPR016688 -
Vium1385g00013 701 FunFam Predicted mechanosensitive ion channel 531 580 - -
Vium1385g00013 701 SUPERFAMILY Sm-like ribonucleoproteins 522 580 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1385g00013 Vium-Chr1385 73819 78778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1385g00013 4 691 Mechanosensitive Ion Channel Family AT5G12080 43.654 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1385g00013 K22048 - gmx:100813521 1216.06