Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1385g00001 ATGTCTCATTTCGAAGCAAAGGCTGTTCTTGGAAAATTAGAGTATCAAAGAGGTAACGTGAAAAATGCTCTTCAAGTGTTTGATGGAATTGATCTTCAACCAATCATACAACAATTACAAACTTCCCTTTCGGAAAAAGGACCAGTGAAGAATGCTTTGTTGTTTGAAGTCGTCTACCTAAGAATCAAGTCTCTACAAAAGTTGGACAAATGTACTGAAGCTATTGATGAGTGTAAGTGTGTTCTTGATGCTGTTGAGAAGACATATGGTCAGGGTACATTTGATACACAAGTCGACAATAAATCGCAGGAGATAGCCAGTCGTGTAGTGGAGCTCCTTCCAGAGCTTTGGAAACAGGTTGGTCGTTATGATGAGGCATTGTCTGCTTATAGGAATGCCCTACTTAGCCAATGGAACCTTGATAATGAATTTGTTGCAAGAATTCAGAAGGCACTTGCTGTGTTTTTGTTGTACAGTGAAGTGGAGGCAAGTCCACCTAACAAGACGGATGGGTCTTATGTACCCAAAAGCAATCTGGAAGAGGCAATTCTTCTTTTAATGATTATTTTGAGAAACTTCATCCTTGGTAAGATAAAGTGGGATCCTTCAGTTATGGAACACCTGACTTTCACACTTTCAACATGTGGACAAACCTCTATTTTAGCAAAGCAATTTGAAGAGTTGATACCTGGTGTATACCACCGCATTGATCGTCGGAATTTTATAGCCATGTGTAATTGTATAGCTGGAGAAAATAAAAGTGCTTTGAATCTACTTAGGATGTCTTTACATAAACATGAACGACCAAATGACCTAATAGCATTATTATTGGCTGCCAAAGTTTGTAGTGAGGATCCTCATCTTGGTGCTGAGGGAGTAGGTTATGCACAAAGAGTAATCAATAATGCCCGAGGATTAGATGAGCATTTGAAAGGTGTGGGTCTTAGGATGTTGGGACTTTGCCTAGGAAAACAGGCTAGGGTTTGTTCTTCTGACCATGAGAGGTCTAACCTTCAATCCAAAGCTCTACAATCATTAGAGAAGGCAATTAGATTGGAGCAAAATAACGCTGATCTCATTTTTGAATTGGCTATTCAATATGCTATGCACCGAAATTTAACTGTTGCTTTATCTTGCGCTAAACAGTTCTTTGACAAAACTGGTGGCTCTACATTGAAAGGTTGGAGATTGCTTGCTCTAGTTTTGTCTGCACAAAAAAGATTTGCAGAGGCCGAAGTAGTCACTGATGCAGCTGTAGACGAGACTGCAAAATGGGAGCAGGGGCCATTACTCAGGCTGAAAGCCAAGTTGAAGATCTCCCAATTACGACCCATGGATGCTATTGAAATTTATCGGTACCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCACCTGGGCCACCTAAACAAGGTTCACAGGTTGAAGATGATAAGATAAACGAACTTGAAGTTTGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCACTGGAAGGATGCCGAAATTTGTTTGCAAAAGGCGAAAGAGTTAAAGGAATACTCACCAGCAACAACACACGCTGAAGGCAAGAACAAATCTTTATGTTGTCAACAGTTTACTTTACCACATTGA 1614 0.4027 MSHFEAKAVLGKLEYQRGNVKNALQVFDGIDLQPIIQQLQTSLSEKGPVKNALLFEVVYLRIKSLQKLDKCTEAIDECKCVLDAVEKTYGQGTFDTQVDNKSQEIASRVVELLPELWKQVGRYDEALSAYRNALLSQWNLDNEFVARIQKALAVFLLYSEVEASPPNKTDGSYVPKSNLEEAILLLMIILRNFILGKIKWDPSVMEHLTFTLSTCGQTSILAKQFEELIPGVYHRIDRRNFIAMCNCIAGENKSALNLLRMSLHKHERPNDLIALLLAAKVCSEDPHLGAEGVGYAQRVINNARGLDEHLKGVGLRMLGLCLGKQARVCSSDHERSNLQSKALQSLEKAIRLEQNNADLIFELAIQYAMHRNLTVALSCAKQFFDKTGGSTLKGWRLLALVLSAQKRFAEAEVVTDAAVDETAKWEQGPLLRLKAKLKISQLRPMDAIEIYRYLLALVQAQRKSPGPPKQGSQVEDDKINELEVWHGLANLYASLSHWKDAEICLQKAKELKEYSPATTHAEGKNKSLCCQQFTLPH 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1385g00001 537 Gene3D Tetratricopeptide repeat domain 2 523 IPR011990 GO:0005515
Vium1385g00001 537 SUPERFAMILY TPR-like 340 512 IPR011990 GO:0005515
Vium1385g00001 537 PANTHER PROTEIN NPG1 5 524 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1385g00001 Vium-Chr1385 27944 31315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1385g00001 5 524 Calmodulin-binding Proteins AT2G43040 65.306 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1385g00001 K21843 - gmx:100811897 807.364