Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1384g00002 ATGCAAACCTTGATCATGCTCAACCAAATTCTAAGATGGCTGAAGAGACCAAAGGTACTGAGACTTGTATGTCTTGCTTCATCTGTTGTTGGATTGCTCTGTTATGCACTCAGTTCCTCTTTCAAGTATTTACTAGGAAACTGGAGCTGGTGGAAGATGCTTATTTATATTGTTTTCAGTTTCATCATTTGCCTAGCCGTCTTGTTCACACCTGCAAGGTCGAGCTCCACCTCTCTCCGGTTGGAAGCTCATTTGGCATTTTTGGTTCTAATAATCACTTCTGTTTATTCCTTTTTCTTTGATAACGTGGTGAAGGGTAAACCTGATGCATACAGTCTCATCTCTTGTGCTGCTTTTGCTACCATGTCGCTTGGCTTGTCAAATCTCACTCAATTTGGATTCCAGATCGATCTGCTATATTTCTTCTGCGGAGGTTTAACAGTACAGCTCATGAAGATCAAATTGTGGTTAGTCACTGTTGGAGGTGGTTTCACTTATTCCCTCCTCCAGCTTCGTCACTATCCGAGCTACACACAAGGGGAGAATCTTCAGCTCTTGAACCAAAATCATGTGATCATTCAAGTCGATGATTCAGGAAGAATTAGTAGTAGCAGTCCTGTTATCATGGAACAACAAGCTAATGCTGATGTCGGTAGTACTCTAGGCACCTCACCAGAAGATGGGGATCTTATTCAAAGCAATTCAACTTCAGAAAATGGAAGCGTTGATGATGGTCTTTTCGTCCAACAACAGTTCATCAACTGTATAAAGGAGCTTGAAAAGGAGAATCAGATGCTTGTTCCCATGGTTTGTAGTCACGTGGAGAAATACCTTAAAGCCGTGTTTGACTCCAACGACAAAGACAAGGACCAGATTCAAATGTTGGAAGTACCGGTTCCAGACGTCAACTTGGTGATGGATGCACTTCCATTTGAAATTATAAGCCGCCTTAAAGAAATCGTGAAGCTGATTGTGGAAGGAGGTTTTACGGAGGAATGCAGCGACATTTACAGCAAATGGCGAAAGGAGTTTGCAGAACAGTGTCGGCGGACACTTGGGTTGCAATTTCAGACGCCCAAGGATGAGGACGTTGAGAAGTGGTTAAAAACGTGTAAGGCAACTTCGAAGATACTGTTTCCCAATGAAAGGAGACTCTGCGATTACCTCTTTTCAGGGTTCTCTGTCGCTGCGGATGCCTTCTTCGACAAGGTTTGCAAGGAACTGACGATTGGACTAGTGAGTTTTGCCGATACCACCATGACAACTGGGAATTTGCCGAATCTTCTGTTCAACATTGTCCCTAAAATGTCGAAGCCATTGGTCGAGTTGACACGGGAGTCCATCTCACCGATTTTGTTTCGCAAATTGTCGTTTGTAAATGATATTCAAGGAGTTCGGCAAAGATTGGCTATCCTAAACAAGTTGAGGGAACTTACTTATCCCAATAATGTGCAGGCACCTGTTACTGATGGAGGGCTTCATCTGATTACTAAGAAAGCAATGGACCACATCCATAAGATAGAGCAAAAGTTTGGCTACCGCTTCGCAAATTCTTCATTTTGGGTGGTGATAGGAAGGATGATTGAGTTGTTAGAGAGCGAATTGGAAGCCAAGTCTAAAGACTTCTACGCTGACCCCGCCCTGAGCTCTGTTTTTATGATTAATAATCTCAGCTACATAGAACAAAAGACGCATGATTTGCAATTCGACGATGATTTCCAATTCGACGATGATTGGTTTCGAACAAACAAAGCAAAGGTGGAAGAAAACTACAACCTGTATCTAAGAAGTTCGTGGAATAAGATGGTGGACTTTTTGAAGGTTGAGACGAATGAGTTGGCGGAGGCTGATGTGGTAGCGGAGTTAATGAAAGAAAAGCTCAATTTGTTCAACCTGCACTTTGAGGAGACATGCACAATTCAGTCTACATGGACTGTCTCTGATAAGCGACTGAAGGAACGAATAGTAAAGTCCATAGAGGAGATTTTGTTACCAGAATATGGAAAGTTTTGTGACAGGTTTCGAGTTGTTTTTGGTAATCAAGCTTATCATTATATTAAGTTTGGATTTCTAGACATTCAAAATTGTCTCAGCCATTTGTTTCTTCTAGATGATGAGATGACTCTCGAAGACAAGAAAACTGTATGA 2148 0.4199 MQTLIMLNQILRWLKRPKVLRLVCLASSVVGLLCYALSSSFKYLLGNWSWWKMLIYIVFSFIICLAVLFTPARSSSTSLRLEAHLAFLVLIITSVYSFFFDNVVKGKPDAYSLISCAAFATMSLGLSNLTQFGFQIDLLYFFCGGLTVQLMKIKLWLVTVGGGFTYSLLQLRHYPSYTQGENLQLLNQNHVIIQVDDSGRISSSSPVIMEQQANADVGSTLGTSPEDGDLIQSNSTSENGSVDDGLFVQQQFINCIKELEKENQMLVPMVCSHVEKYLKAVFDSNDKDKDQIQMLEVPVPDVNLVMDALPFEIISRLKEIVKLIVEGGFTEECSDIYSKWRKEFAEQCRRTLGLQFQTPKDEDVEKWLKTCKATSKILFPNERRLCDYLFSGFSVAADAFFDKVCKELTIGLVSFADTTMTTGNLPNLLFNIVPKMSKPLVELTRESISPILFRKLSFVNDIQGVRQRLAILNKLRELTYPNNVQAPVTDGGLHLITKKAMDHIHKIEQKFGYRFANSSFWVVIGRMIELLESELEAKSKDFYADPALSSVFMINNLSYIEQKTHDLQFDDDFQFDDDWFRTNKAKVEENYNLYLRSSWNKMVDFLKVETNELAEADVVAELMKEKLNLFNLHFEETCTIQSTWTVSDKRLKERIVKSIEEILLPEYGKFCDRFRVVFGNQAYHYIKFGFLDIQNCLSHLFLLDDEMTLEDKKTV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1384g00002 715 Pfam Exo70 exocyst complex subunit 366 698 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vium1384g00002 715 SUPERFAMILY Cullin repeat-like 251 701 IPR016159 -
Vium1384g00002 715 PANTHER EXOCYST COMPLEX PROTEIN EXO70 246 701 IPR004140 GO:0000145|GO:0006887
Vium1384g00002 715 MobiDBLite consensus disorder prediction 218 240 - -
Vium1384g00002 715 Gene3D Exocyst complex component Exo70 247 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1384g00002 Vium-Chr1384 21650 24021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1384g00002 285 701 EXO70 exocyst subunit family AT5G58430 37.333 5.33e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1384g00002 - - vra:106752607 1115.91