Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1384g00001 ATGAAAGGTTGGATGAATACGATGCCCATGTTCAGCCAAATTCTGAGATGGATGAAAAAACCAAAGGTACTGAGACTACTATGTCTCGCTTCAACTGTTGTTGGACTGATCTGTTATGGACTCAGTTCGTTTCTAAACCATTTGCTCGGAAACTGGAGCTGCTGGAAGATGTTTCTTTATATTGTTTTCAGTTTCGTTGTTTGCCTTGCCGTATTGTTCGCACCGGCAAGGTCGAGCTCCACCTCTCTCCGGTTGGAAGCTCATTTGGCATTTTTGGTTCTAATGCTCACTTCTAATTTGCATTACACTTTAATAGATAACGTGGTGAAGGGTAAACCTGATGCATACAGTCTCATCTCTTGTGCTGCTTTTGCTACCATGTCACTTAGCTTGTCAAATCTCAGTCAATTTGGATTCCAAATTGATCTACTCTATTTCTTCTGCGGAGCTCTAACAATACAACTCATGAAGATCAGATTGTGGTTAGTCATTGTTGGAGCAGGTTTCACTTATTCCCTCCTCCAGCTTCGTGACTATCCGAGTGACACACCAGAGGAGAATCTTCAGCCCGACGAAGAAAATCAACTCTTAATCATTGAAGTTGATGACACAGAGAGTGATGCACAACAAGCTAATTTTGATGTTGATAGTACTGTAGGTAGTTCACCAGAAGATGAGGATCTTATATTTCGAGACCATCTACTCACTCAAAGCGATTCACATCCGGAAGATGCTGGTCTTATCATTCAACAACAATTCATGAATTGTATAAAAGAGCTTGAGAAGGAGAATCAGAGGCTTTTTCCCATAGTTGGTAGCCACGTCGAAAACTACATTAAAGCCGTGTTTGACTCGAAAGAAGTATCAGATCCTAACGTCAACTTGGTGATGGATTTACTTCCATTGGGAATTATGAGGCGCCTTAAGGAAAACGTGAAGCTGATGGTGGATGCAGGTTTCATGGACGAATGCATCGACATTTACAGCAAATCGCGAAAAGCGTTTGTAGAACAGTGTCTACGGCCACTTGGGTTGCAATTTCAAACGCCCAACAAGGACGTTGAAAAGTGGTCAAAAACGTGGAAGGCTGTTGGGAAGATACTGTTTCCCAATGAAATGAGACTCTGCAGTTACATCTTTTCAGGGATACATGATGCTGCGGGTGTCTCCGCAGTCGAGAAAGTTTGCAAGAAAATTTCGACTGATCTACTGAGTTTTACCGATACCACCATAACAGCTGATAACTATTTGCCTAATCTTTTGTCTTACATCGTTCCTAAAGTGTCGGAGTCATTGGGCGAGCTGACACGAGAGTTAATCTCACCGACTTCGGTTCACGAATCGTCTATTGTTGATGACATTAAAGATGTTCGGCTAAGTTTGGGTATGCTAAACCAGTCGAGGGATAGTATTCACCCTAATAATGATGATATTAAAGACGTTCGGCAAAGATTGGCTATGGTAAACAAGATTGGGGGGAATATTCTTTACCCCAATAAGGAGAAGGCAGGTCTGATAGGTGGAGGGTTCCATTTAGTTACTGATTTGCTGAAGAAGAAGATACGGAAATTATAG 1575 0.419 MKGWMNTMPMFSQILRWMKKPKVLRLLCLASTVVGLICYGLSSFLNHLLGNWSCWKMFLYIVFSFVVCLAVLFAPARSSSTSLRLEAHLAFLVLMLTSNLHYTLIDNVVKGKPDAYSLISCAAFATMSLSLSNLSQFGFQIDLLYFFCGALTIQLMKIRLWLVIVGAGFTYSLLQLRDYPSDTPEENLQPDEENQLLIIEVDDTESDAQQANFDVDSTVGSSPEDEDLIFRDHLLTQSDSHPEDAGLIIQQQFMNCIKELEKENQRLFPIVGSHVENYIKAVFDSKEVSDPNVNLVMDLLPLGIMRRLKENVKLMVDAGFMDECIDIYSKSRKAFVEQCLRPLGLQFQTPNKDVEKWSKTWKAVGKILFPNEMRLCSYIFSGIHDAAGVSAVEKVCKKISTDLLSFTDTTITADNYLPNLLSYIVPKVSESLGELTRELISPTSVHESSIVDDIKDVRLSLGMLNQSRDSIHPNNDDIKDVRQRLAMVNKIGGNILYPNKEKAGLIGGGFHLVTDLLKKKIRKL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1384g00001 524 Gene3D Exocyst complex component Exo70 236 468 - -
Vium1384g00001 524 SUPERFAMILY Cullin repeat-like 252 419 IPR016159 -
Vium1384g00001 524 PANTHER EXOCYST COMPLEX PROTEIN EXO70 251 422 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1384g00001 Vium-Chr1384 12744 16843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1384g00001 288 522 EXO70 exocyst subunit family AT5G58430 27.823 6.04e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1384g00001 - - vum:124826138 1043.88