Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13840g00001 ATGGTTGTCGAGGCTCGCATACCCACTGGGATTGACAACACAAAAAGGAGTAAGACCTTAACCAAACTAGATGAACCTGTTCACGCACAAGGTAGAGAAGACCCTAACCAAAACACCGGCATTTCCATCATAAACTGCAAGGTTGCAGCAGCTGCTGATTTGATCCCTGTGAAATCTGAGTTCAGGAATTACCTGGGTCGTCCCTGGAAGATGTATTCGAGGACTGTTTTTCTGAATTCATTGATGGAGGATCTGATAGACCCTGTAGGGTGTTCGCAATTGGATGACACGTTTGCATTGAAAACTTTGTATTATGGAGAGTACAACAACACAGGTCCAGGTGTTAATACAAGTCGTAAAGTTACGTGGTCTAGTTATAGGTTTATCACCAACTCCACTACGCAACCTACTTCGTCGTTGCAAATTTCATTTAAGGCAAACAATGGTTGA 450 0.4311 MVVEARIPTGIDNTKRSKTLTKLDEPVHAQGREDPNQNTGISIINCKVAAAADLIPVKSEFRNYLGRPWKMYSRTVFLNSLMEDLIDPVGCSQLDDTFALKTLYYGEYNNTGPGVNTSRKVTWSSYRFITNSTTQPTSSLQISFKANNG 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13840g00001 149 SUPERFAMILY Pectin lyase-like 27 134 IPR011050 -
Vium13840g00001 149 Gene3D - 12 147 IPR012334 -
Vium13840g00001 149 Pfam Pectinesterase 23 133 IPR000070 GO:0030599|GO:0042545
Vium13840g00001 149 PANTHER PECTINESTERASE 25 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13840g00001 Vium-Chr13840 3901 5638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13840g00001 29 132 Carbohydrate Esterase AT1G11580 56.731 1.46e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13840g00001 K01051 - vum:124822202 305.064