Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1383g00008 AGTTTAAATCATAGAGATTTAATCTTTTTTGTTCGCAGATATGTTCGATTATTAATTCGTTCCTTCGAAAATAATCACATGGAAAGGGAACGCACGCGGAAACGCCCTCGTCTCGCATGGGACGTAGCCCCTCCCACAGTGCCCGAGCCTCAACTGGCTCTGCCGGTACCTGGTGACGAAGGAATTGAAAGAAAGCACGCTTCACCTCCAAGAAGGGACGACGATCGCGAAGGACATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATATAAAATCCTCGGCAAGATGCATGTTGCTAGTGCTGTAGGCACATTTGGTCGGGTATTGGAATGTTGGGACCGCCAAAGTAGAGAATATGTGGCTGTCAAGGTGGTTAGAAGCATACGGAAATATCGCGATGCAGCCATGCTCGAGGTTGACGTGCTTCAACATCTAGCAAAGAACGATAGAGGAAACTCACGATGTGTGCAGATCCGAAATTGGTTTGATTACAGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACCGATCTGAAGCCAGAAAATATTCTTCTGGTTTCTTCTGAATATGTAAAGCTACCTAGCTATAAGAGTTTTTTCCATTCCTCATATGAAACGCAGTTCAGGTGCTTGCCCAAGTCAGTGCTATTTAAAGCTATTGATTTTGGTAGTCCTCATATGATATCAGAATCATACTCCATTGTTTCTAACAAGGCTTACAACAGAGCCCCGAGAATTATTCTAGGTCTAGGCTGGTCATATCCATGTGATCTGTGGAGTGTTGGATGTATTCTTATTGAACTAATGCACGGGTCTAAATGTGTGGACTTTTGTCAGGGTGAGGCGTTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAAAGAGTTTTGGGACCTATTCCAATCCCATGAATGCGAAGGTCCAATAAGGGCGCAGAAAAGTATTTCAAGCGTGGATCAAGACTAAGATGGCCTGAAGGAGCTATTTCCAGAGAGAGCATCAATGCAGTAAAGAAGCTTGGTCATCTGAAGGATATTGTATCTCGAAGTGTGGACTCTTCAAGGTCCTCTTTAACTGACTTGTTACATGGGTTATTGTCATATGACCCAACCAAACGGTTAACCGCTCTTCAAGCGCTCGATCATCCCTTCTTTAGGAATCCAACCTGA 1311 0.434 SLNHRDLIFFVRRYVRLLIRSFENNHMERERTRKRPRLAWDVAPPTVPEPQLALPVPGDEGIERKHASPPRRDDDREGHYVFNLGENLTPRYKILGKMHVASAVGTFGRVLECWDRQSREYVAVKVVRSIRKYRDAAMLEVDVLQHLAKNDRGNSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSYKSFFHSSYETQFRCLPKSVLFKAIDFGSPHMISESYSIVSNKAYNRAPRIILGLGWSYPCDLWSVGCILIELMHGSKCVDFCQGEALFQTHENLEHLAMMERVLGPIPIPXMRRSNKGAEKYFKRGSRLRWPEGAISRESINAVKKLGHLKDIVSRSVDSSRSSLTDLLHGLLSYDPTKRLTALQALDHPFFRNPT 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1383g00008 436 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 49 434 - -
Vium1383g00008 436 MobiDBLite consensus disorder prediction 45 76 - -
Vium1383g00008 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vium1383g00008 436 CDD PKc_CLK 79 432 - -
Vium1383g00008 436 Pfam Protein kinase domain 105 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1383g00008 436 SUPERFAMILY Protein kinase-like (PK-like) 79 434 IPR011009 -
Vium1383g00008 436 Gene3D Phosphorylase Kinase; domain 1 79 176 - -
Vium1383g00008 436 MobiDBLite consensus disorder prediction 59 76 - -
Vium1383g00008 436 SMART serkin_6 92 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1383g00008 436 ProSiteProfiles Protein kinase domain profile. 96 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1383g00008 436 Gene3D Transferase(Phosphotransferase) domain 1 150 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1383g00008 Vium-Chr1383 54242 57674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1383g00008 262 435 EF-hand Containing Proteins AT5G22840 28.649 5.09e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vium1383g00008 Pkinase 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1383g00008 K08287 - gmx:100782453 674.085