Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1383g00003 ATGGAAGGAACTCATGCAAAAGAGGAAACCCTACCACCAGGATTTCGATTTCATCCTACAGATGAAGAACTTGTTACTTGCTATCTCCTAAATAAGATATCGGATTCTAATTTCACAGGCAGAGCAATAACTGATGTAGATCTCAACAAAAGTGAGCCATGGGAGCTTCCAGGGAAAGCTAAGATGGGTGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCGACGGGTGTGAGAACCAATCGAGCAACAAACACAGGGTATTGGAAGACAACAGGGAAAGACAAGGAGATCTTGAACAGTGGAACATCAGAATTGATCGGCATGAAGAAGACTTTAGTTTTCTACAAAGGAAGAGCTCCAAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCAAAATCCAGTTTCAGAACTACTAGGCAGGATGAATGGGTGGTTTGCAGGGTATTCAAGAAGAGTGGGGGAGCAAAAAAGTTCCCTTCTTCCAACCATGCAAGAGCAGTGAATCCTTACAGCTTAGAAATAGGGCCAAATATTATGCAGCCACCAGTGATGCAATTGGGAGATCCTGCTGCTCATTTCCTTTATGGAAGGAACTACATGAACAGTGTTGAGTTAGGTGAACTTTCTAGGGTTTTAAGAGGGGGAGGATCAACAAGTAGTGTCAATCAACCAATGCAATCCCAATTGGGGTACCCTACATCAGCAGGATTCACCATTTCAGGACTGAATTTGAATCTGGGAGGAGGAGGAGGAGGAGCAACAACCACAACACAACCCATTTTTCGACCAATGCAAGCTTCTTCTGCTCCTGTTCATACAATGGCTCAAGTTCTTGATGTCAATTCCAGCATGATGACAACCGGATCTCTTGGTGCAGATGTAGGTTATGGATCAGAAATGAGTAATAACATGAATTCTCAAGGGAATAGGTTCATGAGTATGGACCACTGCATGGATCTAGACAACTACTGGCCTTCCTACTAA 1011 0.4342 MEGTHAKEETLPPGFRFHPTDEELVTCYLLNKISDSNFTGRAITDVDLNKSEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSGTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTTRQDEWVVCRVFKKSGGAKKFPSSNHARAVNPYSLEIGPNIMQPPVMQLGDPAAHFLYGRNYMNSVELGELSRVLRGGGSTSSVNQPMQSQLGYPTSAGFTISGLNLNLGGGGGGATTTTQPIFRPMQASSAPVHTMAQVLDVNSSMMTTGSLGADVGYGSEMSNNMNSQGNRFMSMDHCMDLDNYWPSY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1383g00003 336 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Vium1383g00003 336 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Vium1383g00003 336 SUPERFAMILY NAC domain 6 160 IPR036093 GO:0003677|GO:0006355
Vium1383g00003 336 ProSiteProfiles NAC domain profile. 11 160 IPR003441 GO:0003677|GO:0006355
Vium1383g00003 336 FunFam NAC domain-containing protein 100-like 20 164 - -
Vium1383g00003 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1383g00003 Vium-Chr1383 29923 31953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1383g00003 7 336 NAC Transcription Factor Family AT2G24430 54.624 4.05e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1383g00003 NAM 4.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1383g00003 - - gmx:100804931 583.563