Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13823g00008 ATGGTCATCACATCCGCTGCCACACACCCAGATGAACAAGATGAGTGTCTATCATCAACGTTTGCTTCCAGATATGTGCGGCAACCTATTCCCAAGTTCAAGATGCCAGATAACTCTATACCAAAGGATGCTGCTTATCAGTTAATAAACGATGAGTTGATGTTGGATGGCTTACCAAGGCTCAACTTGGCCTCATTTGTGACCACTTGGATGGAGCCTGAGTGTGAAAAGCTCATATTGGCCTCACTTAACAAGAACTATGTTGACATGGATGAGTATCCTGTCACCACTGAGCTTCAGAATCGGTGTGTCAATATAATAGCAAATCTATTTCATGCTCCTCTAAGTGAACAAGAGACTGCAGTAGGTGTTGGAACTGTGGGATCATCTGAGGCAATAATGTTAGCAGGTTTGGCTTTCAAAAGGAAATGGCAGACAAAGAGAAAAGCAGAAGGCAAACCATATGATAAGCCCAACATAGTTACTGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCAAGGTACTTTGAGGTAGAGCTCAAGGAAGTGAAACTCACTGAGGGATACTATGTGATGGACCCAGTGAAAGCAGTTGAAATGGTGGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGGTCAACTATGACTGGAGAATTTGAGGATGTGAAACTTCTCAATGAACTTCTTACTGAAAAGAACAAGAAGACAGGTTGGGATACCCCAATTCATGTAGATGCTGCCAGTGGGGGCTTTATTGCTCCATTTCTGTATCCTGATCTAGAGTGGGATTTTCGTTTGCCATTGGTGAAAAGCATCAATGTTAGTGGTCACAAGTATGGTCTTGTCTACCCTGGTGTTGGTTGGGTTGTCTGGATGAGTAAGGATGACTTGCCAGATGAACTTGTTTTTCACATCAATTACCTTGGTTCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGGATCCAGTCAAATCATTGCTCAGTATTACCAATTTATTCGGCTTGGCTTTGAGGGTTACAAAAACATCATGGAAAATTGCTGGGACAATGCAAGAACTCTGAGGAAAGGAATTGAGAGAACAGGGAGGTTCAACATCATCTCGAAGGACATAGGGGTGCCACTTGTGGCCTTCTCCTTGAAAGACAGTAGCCAGCACTCGGTGTTTGAGATATCAGACCAGCTGAGAAAATATGGGTGGATAGTTCCAGCCTACACAATGCCACCAGATGCAGAGCACATTGCAGTTCTGAGGGTGGTGGTGAGGGAGGATTTCAACCATGGTTTGGCTGAGAGACTGGCTGCAGACATAGACAAGGTTGTGAAGCTCTTAGACACACTTCCTAGCCCCATCACAACCGATGCTGCTCATGTCACACCCATCACCACTGATCCTAATCAGAAGGTCAAGAAGAGTGATATAGAGACTCAGAGAGAGATTACTATCTACTGGAAGAGACTTCTGGAGGGGAAGAAACTTGGAGCTTGCTAG 1500 0.4433 MVITSAATHPDEQDECLSSTFASRYVRQPIPKFKMPDNSIPKDAAYQLINDELMLDGLPRLNLASFVTTWMEPECEKLILASLNKNYVDMDEYPVTTELQNRCVNIIANLFHAPLSEQETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPVKAVEMVDENTICVAAILGSTMTGEFEDVKLLNELLTEKNKKTGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWMSKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCWDNARTLRKGIERTGRFNIISKDIGVPLVAFSLKDSSQHSVFEISDQLRKYGWIVPAYTMPPDAEHIAVLRVVVREDFNHGLAERLAADIDKVVKLLDTLPSPITTDAAHVTPITTDPNQKVKKSDIETQREITIYWKRLLEGKKLGAC 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13823g00008 499 NCBIfam glutamate decarboxylase 19 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vium13823g00008 499 FunFam Glutamate decarboxylase 364 451 - -
Vium13823g00008 499 FunFam Glutamate decarboxylase 6 68 - -
Vium13823g00008 499 SUPERFAMILY PLP-dependent transferases 10 446 IPR015424 -
Vium13823g00008 499 Gene3D - 69 363 IPR015421 GO:0003824
Vium13823g00008 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vium13823g00008 499 Gene3D - 1 68 - -
Vium13823g00008 499 Gene3D - 364 451 - -
Vium13823g00008 499 FunFam Glutamate decarboxylase 69 363 - -
Vium13823g00008 499 CDD DOPA_deC_like 62 442 - -
Vium13823g00008 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13823g00008 Vium-Chr13823 20372 22938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13823g00008 7 499 Calmodulin-binding Proteins AT3G17760 78.499 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13823g00008 K01580 - gmx:100783047 920.998