Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13823g00005 ATGAATGCTTCAATGAGGAAAAAGGTTCAAAGGAAGTGTAAGATAAGAGGCTACAATCTCAAAGTCGATGCTCTCGACGAGATCCTCTCCTTCGCATCTCGCTTCGAAGGCGACGAGGATGAAGCAATCGATGTCCTCCTCAAAGAGCTTGAAAAATCTCTGAAATCCACCATAATCGACAAGGAGACAGTGCACCGTGTGGTGAGCCAACTGCTGGAAGTTGAGGCGGACATGGAGGATAGCTCCGATGCTGGCACCAGCACCTCTTCCGCCATTCGCGTTGTCGATGCGTTTCTCGTCCCGAAGTATAAATACGACACTGTCAGAAAGCAGTTCTACGAGCATACGGGCACCTTGTCTATTCATGGAGAAGCATCTGCAAAAGCAGCTTTGTACAGGGATAGGTTTCTGTTGTTGTCCCAGAGGCTCTCTCGTGACCAGCATTTTTCCAAACCTGCTTTTGAATCTGAATTTTCTCATTTCGGGAGTTGTGAGATATCTCCTATTCAATCTCTGGTTGGGCAAACAGGTAGAAAATGGGTGATGGGCGTAATATCTCAGCTGGAAGATGGTCATTACTATTTGGAAGACCTTACAGCTGCAGTTAAAATTAACTTGTCCAATGCAAAGATAACTACAGGACTTTTTTCAGAGAACACTATAGTTGTGGTTGAAGGGGAGATGCTCGTGGAGGGTATTTTTCAGGTCTTAACATGTGGATTTCCTCCACTGGAGGATAGAGATAAGTCTCTGAAAGTACTTGCAGGGAATGACTTTTTTGGTGGTGGTACTCTTACAAAAGAGGAAACTATTAGACTGGAAGAGATGGAGAAAAGAGCAGTAAATGACATGTTTGTCATACTTTCTGATGTTTGGCTAGACAGTGAAGAGGCTTTGACAAAGCTAGAGACTGTTCTGGATGGTTTTGAGAGTGTGGAAGTGGTTCCTTCCTTATTTGTTTTCATGGGAAACTTCTGTTCTAGGCCATGTAACCTTTCATTTCATTCTTATTCGAGCCTCAGAATGCAGTTTGGTAAGCTGGGGGAAATGATTGCTGCCCATACACGGCTGAAAGAGCAGAGTCAATTCCTGTTTATCCCAGGTCCCGATGATGCAGGTCCTTCTACTGTTCTTCCTAGATGTGCTCTACCAAAATATTTAACTGAAGAACTCCAAAAGCACATACCCAATGCAATATTTTCAAGCAACCCTTGCAGGGTCAAATTTTATACCCAAGAAATTGTATTTTTCCGCCAGGATATGCTGCATAGAATGCGTCGCTCATGTTTGATGTCTCCTTCTACGGAAGAAACTGATGATCATTTTCAACATCTTGTTGCTACCATAACCCATCAAAGTCATCTCTGTCCACTGCCCCTTACTGTTCAACCTATCATTTGGAATTATGACCATTGTCTTTATCTTTATCCAACTCCTCACACGATAGTTTTGGGTGACAGAAGTCAGCAGAAAGCATTCAAGTACACAGGAATCACTTGTTTTAATACTGGTTCCTTCTCAATTGACAGCACGTTTGTGGCATATCGTCCCTGCTCTCAGGAAGTTGAATTGTCAGCCTTGTAG 1584 0.4331 MNASMRKKVQRKCKIRGYNLKVDALDEILSFASRFEGDEDEAIDVLLKELEKSLKSTIIDKETVHRVVSQLLEVEADMEDSSDAGTSTSSAIRVVDAFLVPKYKYDTVRKQFYEHTGTLSIHGEASAKAALYRDRFLLLSQRLSRDQHFSKPAFESEFSHFGSCEISPIQSLVGQTGRKWVMGVISQLEDGHYYLEDLTAAVKINLSNAKITTGLFSENTIVVVEGEMLVEGIFQVLTCGFPPLEDRDKSLKVLAGNDFFGGGTLTKEETIRLEEMEKRAVNDMFVILSDVWLDSEEALTKLETVLDGFESVEVVPSLFVFMGNFCSRPCNLSFHSYSSLRMQFGKLGEMIAAHTRLKEQSQFLFIPGPDDAGPSTVLPRCALPKYLTEELQKHIPNAIFSSNPCRVKFYTQEIVFFRQDMLHRMRRSCLMSPSTEETDDHFQHLVATITHQSHLCPLPLTVQPIIWNYDHCLYLYPTPHTIVLGDRSQQKAFKYTGITCFNTGSFSIDSTFVAYRPCSQEVELSAL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13823g00005 527 Gene3D - 2 70 - -
Vium13823g00005 527 Pfam DNA polymerase alpha/epsilon subunit B 285 490 IPR007185 GO:0003677|GO:0006260
Vium13823g00005 527 PIRSF DNA_pol_epsilon_2 1 527 IPR016266 GO:0003677|GO:0006261|GO:0008622
Vium13823g00005 527 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 1 527 IPR016266 GO:0003677|GO:0006261|GO:0008622
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13823g00005 16 484 Core DNA Replication Machinery Family AT5G22110 71.064 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13823g00005 K02325 - gmx:100784116 924.465