Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1380g00001 ATGGCCACGTTAGCTATTACTGCTCTCACTCTCGCTCGCGTTTCTTCTTCTTCTTCCAACTTCTTTTTTTCTCGCACCTTCAATCATTTCACTACAAAGTGCGTACCTTTCAGAATCCTACATCAACGACGTCGTTTCTTCTGCCACAACTGCAAAAGGGGAATAGCATCTTCACCAGTCACCATCCCTTCCATTTCCGATAAAATGACCGCACCCTATGGTTCCTGGAAGTCCCCCATCACCACTGACGTCGTCTCCGGCGCCGCCAAGAGGCTCGGAGGCACGGCCGTAGACGCCCGTGGACGTCTCGTCTGGCTTGAATCACGTCCGGCGGAATCAGGACGGGGAGTTCTTGTGGTTGAGGCAGAAAATCCGGGAGGTGAGGCTGTGGACATTACACCTAAGGAGTTTGGAGTGAGAACATTGGCTCAGGAATATGGAGGTGGTGCTTTTACTGTTTCAGGGGATGCTGTCTTTTTTGCAAATTACAAAGATCAGAGATTGTACCAGCAGTCCATCAGTTCTCTGGATGTGCCTCCCATACCTCTTACTCCGGATTATGGGAGCCCAGTAGTCAGCTATGCTGATGGAATATATGATGGACGCTTTAACCGTTTTGTCAGTGTAAGGGAAGATCGTCGAGAGAGTGCTCAAAATCCATCTACAGCAATTGTATATGTAGCACTTGGAAGCAAAGATGTTCAGGAAGCCCAGGTACTAGTTAGTGGAAGTGACTTCTATGCTTTCCCACGTCTTGATCCAAAAAGTGAAAGAATAGCTTGGATTCAGTGGAGTCATCCATACATGCCATGGGATAAATCAGAACTTTGGGTTGGCTATATTTCTGAAAAAGGAGAGATCTACAAGCAGGTGTCTGTTGCGGGGAATGATCCTGCACTGGTGGAGTCCCCAACTGAGCCCAAGTGGTCTTCTGATGGGGAGCTGTTTTTCATCACGGATAGGGCAAATGGTTTTTGGAATCTCCATAAATGGGTAATTCTTTAA 1005 0.4756 MATLAITALTLARVSSSSSNFFFSRTFNHFTTKCVPFRILHQRRRFFCHNCKRGIASSPVTIPSISDKMTAPYGSWKSPITTDVVSGAAKRLGGTAVDARGRLVWLESRPAESGRGVLVVEAENPGGEAVDITPKEFGVRTLAQEYGGGAFTVSGDAVFFANYKDQRLYQQSISSLDVPPIPLTPDYGSPVVSYADGIYDGRFNRFVSVREDRRESAQNPSTAIVYVALGSKDVQEAQVLVSGSDFYAFPRLDPKSERIAWIQWSHPYMPWDKSELWVGYISEKGEIYKQVSVAGNDPALVESPTEPKWSSDGELFFITDRANGFWNLHKWVIL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1380g00001 334 SUPERFAMILY Tricorn protease N-terminal domain 147 331 - -
Vium1380g00001 334 PANTHER PEPTIDASE S9 PROLYL OLIGOPEPTIDASE 68 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1380g00001 Vium-Chr1380 3429 13479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1380g00001 70 332 Carbohydrate Esterase AT5G36210 68.939 1.19e-130 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1380g00001 - - vum:124826127 669.848