Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13805g00001 ATGAGTTTTATTCTACACAAACTACTGCTTGCTTTGTGGTTGTGCTGGAGTTCTGCTGTTCATGTTCACCCAGCAGATGAAAGTTTAAAGCCCGGTGATACATTTAAATTTTCTTCACCGTCACTATATTCCAAGAATCGCAGATATTTTATTGAATTTTATCCGGTTGGAATTCCGGGTGAAATCGAAGATTTTACTTATTTGGCAGTCTTCAGTGAAATCGAAGATATTGTAGTCTGGGAGGGTAACAGAGAACAACCTGTCGGCCAGAGGGATGTAGTTCTATCCCTAAACTTCTCTGGCGTGCTGAAAATAGAATCTCGACGTGTCAAGAAACCAATTATTCTCTATTCTCCTCCTCAACCTATCAACAACACTGTGGCCACTTTGCTGGATTCAGGCAACTTTGTACTTCAACAACTTCACCCCAATGGCACAAACATTCTTCTGTGGCAGAGTTTTGATTATCCCAATGACACTTTGATCCCCACCATGAAGTTAGGGGTTAATCACAAAACAAGGCATCATTGGTCACTTGTTTCAAAGTTGACCGATTCGCATGCGACTGCAGGTGCCTTTAGTCTTGAATGGGAACCCAAGGAACAAGAACTGATCATAAGAAGACGAGAAAAAATTTGTTGGAAAAGTGGGAAAATGAAGAACAATAGATTTGAGAACATTCCAGAAGATGCACAACATGTGTTGAAGTACAACATAGTATCTAATGGGGAAGAAGACTCATTCTCTTTCACATCTACAAATGAAAACCTTATAAGTCGGTGGACCCTATCGTATAGTGGGCGGTTAGTTTACAAGAACGGATATGTTGCAAGGGCTGATCTGTGTTTTGGATATAATAACACAGGAGGGTGCCAAAGATGGCAGCATATGCCTAAATGCAGGAGTACTGGTGAAGTGTTCACCAAAAAGAGTCTTCGCTCTAATTACGAAAATGTAACCTATGACCAAAATCAGAATATTAGTCACAGTGATTGTGAGGCGGCTTGCTGGAGCGATTGCGATTGCAATGGATTCAAAGAATTGTATCTTGATGGAACTGGATGTAGATTCTATCGTTGGAATTCATCCAAAGATATTATAGTTGACGGCAGTGTTTCGGGTGAAGACTTTTACATACTGGAGAACCCAGGGAACATATATACAGCAAAGACAACATTTACCCCTCATCATCACGGTACAAAAAGGTGGATATGGATAAGTACAGTGGCAGCCACTTTACTGATAATATGCACCTCCATGCTATTCCTAGCCATAAAGAAACGAAAACATGTGCTTCAAGAGAAGAAACGAAAAGAAATGGCGATGAAATTATCTCAAATCGAAGATTTTGAGAATGATTTGAAAAAGGGACATGGATTGAAAGTATTGGATTATGCATTGGTTTTGGCGGCCGCAAATTGGTTTTCATCGGAAAATAAGTTAGGACAGGGAGGTTTTGGACCCGTTTATAAGGGAACTTTGCCAACAGGAGAGGAGGTTGCTATAAAAAGACTTTCAAAAAGTTCAACACAGGGAATTGTGGAATTTAAAAACGAAGTAACACTTATAAGTGAACTTCAGCACATGAATCTTGTTCAACTACTAGGTTGCTGCATTCATGAAGAAGAGAAGATTCTAATTTACGAGTATATGCCTAACAAAAGCTTGGATTTCTATCTTTTCGATTGTACAAGAAGCAAATTACTAAATTGGAATAAACGCTTCAACATAATACAAGGAATTGCTCAAGGATTATTGTATCTTCACAAATACTCAAGACTCAAAGTCATTCATAGAGACTTGAAAGCTAGTAACATACTTCTCGACGAGAACATGAATCCAAAAATTTCAGATTTTGGAATGGCTAGAATGTTTACCGAACAAGAATCCGTGTCAAATACGAACAGGGTTGTTGGGACATATGGTTATATGTCTCCAGAATATGCTATGGAAGGAGTTTTTTCTACAAAGTCTGATGTCTACAGCTTTGGAGTATTGTTGCTTGAAATAGTTAGTGGGCGAAAAAACACTAGTTTTTATGATGATGACCACCCAATAAATCTAATAGGACATGTATGGGAATTATGGAAAGATGACAAGTGTTTTGAATCAGTAGATCCATCATTAGAGGATACATTTGTATATGATGAAGCGCAGAGGTGTATTCATGTTGGTCTCCTATGTGTTGAACAATATGCAAATGATCGACCAACAATGTCTGACGTTATATCAATGTTGACAAACAAGAGTGAAATAGTGTCTTCACCTAAAAGACCAGCATTCTATGTTCAACGAGAGATGCTTAACGAAAATTTATCTTCTGCGGGGTTGTGTACTGGTTCCACAGTAGAAATTACTACTTCCTTGGAAATAGAATAA 2379 0.3842 MSFILHKLLLALWLCWSSAVHVHPADESLKPGDTFKFSSPSLYSKNRRYFIEFYPVGIPGEIEDFTYLAVFSEIEDIVVWEGNREQPVGQRDVVLSLNFSGVLKIESRRVKKPIILYSPPQPINNTVATLLDSGNFVLQQLHPNGTNILLWQSFDYPNDTLIPTMKLGVNHKTRHHWSLVSKLTDSHATAGAFSLEWEPKEQELIIRRREKICWKSGKMKNNRFENIPEDAQHVLKYNIVSNGEEDSFSFTSTNENLISRWTLSYSGRLVYKNGYVARADLCFGYNNTGGCQRWQHMPKCRSTGEVFTKKSLRSNYENVTYDQNQNISHSDCEAACWSDCDCNGFKELYLDGTGCRFYRWNSSKDIIVDGSVSGEDFYILENPGNIYTAKTTFTPHHHGTKRWIWISTVAATLLIICTSMLFLAIKKRKHVLQEKKRKEMAMKLSQIEDFENDLKKGHGLKVLDYALVLAAANWFSSENKLGQGGFGPVYKGTLPTGEEVAIKRLSKSSTQGIVEFKNEVTLISELQHMNLVQLLGCCIHEEEKILIYEYMPNKSLDFYLFDCTRSKLLNWNKRFNIIQGIAQGLLYLHKYSRLKVIHRDLKASNILLDENMNPKISDFGMARMFTEQESVSNTNRVVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIVSGRKNTSFYDDDHPINLIGHVWELWKDDKCFESVDPSLEDTFVYDEAQRCIHVGLLCVEQYANDRPTMSDVISMLTNKSEIVSSPKRPAFYVQREMLNENLSSAGLCTGSTVEITTSLEIE 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13805g00001 792 Pfam Protein tyrosine and serine/threonine kinase 478 721 IPR001245 GO:0004672|GO:0006468
Vium13805g00001 792 SMART blect_4 33 157 IPR001480 -
Vium13805g00001 792 CDD STKc_IRAK 481 748 - -
Vium13805g00001 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672|GO:0006468
Vium13805g00001 792 ProSiteProfiles Protein kinase domain profile. 475 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13805g00001 792 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 129 769 - -
Vium13805g00001 792 SMART serkin_6 475 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13805g00001 792 ProSiteProfiles Bulb-type lectin domain profile. 20 151 IPR001480 -
Vium13805g00001 792 Pfam D-mannose binding lectin 78 182 IPR001480 -
Vium13805g00001 792 PIRSF SRK 273 790 IPR024171 GO:0004674
Vium13805g00001 792 PIRSF SRK 1 279 IPR024171 GO:0004674
Vium13805g00001 792 Gene3D Transferase(Phosphotransferase) domain 1 551 760 - -
Vium13805g00001 792 SUPERFAMILY Protein kinase-like (PK-like) 462 764 IPR011009 -
Vium13805g00001 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 551 754 - -
Vium13805g00001 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 436 550 - -
Vium13805g00001 792 Gene3D Phosphorylase Kinase; domain 1 428 550 - -
Vium13805g00001 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 182 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13805g00001 Vium-Chr13805 1433 4676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13805g00001 451 786 Receptor kinase-like Gene Family AT3G45860 51.594 4.65e-120 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium13805g00001 PK_Tyr_Ser-Thr 8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13805g00001 - - pvu:PHAVU_011G175600g 1144.8