Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13801g00008 ATGAAGGCTAGGGTGCGCGCGTGTAAGGTGAAGAATGAATATGCTTGCTTGATCTGCGGCTTGGGCTGTTGCGCGATTGGGGTGATGGTGCACGAGAAGCAAAATTGTGGTTGCTTTGCCGGAGAAGACGAACGAAGTTCTCAAGCACAAGCAATGTGGCAGAGAGTAAAGAGGCAAGCTGGCATAAGATGTGGTCTCGCCGTTTGCCACATCAAACAAAAGTTAACGGATTTTGGGTTGGCCAAGCTTTACGAGCATGGTGCCAAGCCTAGCACCACACGTGTGGTGGGAACGATGGGGTACCTTGCACCTGAACTCACACGAACGGGGAAACCCACCACCAGTTCTGATGTTTACGCTTTCGGAGCGTTGTTGTTGGAGGTGGTGTGCGGGAGGAGGCCCATTGAGGTGAAGGCATTGCCGGAGGAGCTGGTGCTGGTGGACTGGGTCTGGGAGCGGTGGCGCATGGGGGCGCCGCTGGCGGTGGTGGACCCCAGGTTGGGTGGGGCGTTTGATGAGGTGGAAGTTTTGGTAGTGATTAAAGTGGGGTTGTACTGTTCCGCGGAGGCACCAGAGAAGAGGCCCAGCATGAGGCAGGTGGTGAGGTATTTGGAGAGGGAGGTGTAA 627 0.5566 MKARVRACKVKNEYACLICGLGCCAIGVMVHEKQNCGCFAGEDERSSQAQAMWQRVKRQAGIRCGLAVCHIKQKLTDFGLAKLYEHGAKPSTTRVVGTMGYLAPELTRTGKPTTSSDVYAFGALLLEVVCGRRPIEVKALPEELVLVDWVWERWRMGAPLAVVDPRLGGAFDEVEVLVVIKVGLYCSAEAPEKRPSMRQVVRYLEREV 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13801g00008 208 SUPERFAMILY Protein kinase-like (PK-like) 48 204 IPR011009 -
Vium13801g00008 208 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13801g00008 208 Gene3D Transferase(Phosphotransferase) domain 1 42 208 - -
Vium13801g00008 208 Pfam Protein kinase domain 73 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13801g00008 208 FunFam Lectin-domain containing receptor kinase A4.3 68 208 - -
Vium13801g00008 208 PANTHER - 72 206 - -
Vium13801g00008 208 SMART serkin_6 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13801g00008 Vium-Chr13801 30011 31394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13801g00008 74 207 Receptor kinase-like Gene Family AT3G55550 70.149 7.08e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium13801g00008 Pkinase 5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13801g00008 - - vum:124822188 417.542