Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium137g00002 ATGTCATCACAGATACCTGCAGCGGAGGCGCCGCTGCTCCGCAACCGCCACGACGCCGCCAGAGCGCCGGCGCTAGCGCTCCTCCTCGGTCGAGCCGGCCGTCGAGGCCCCTCCATGCTAGTGAGGGAGACCGCTGCGCGCGAGCTCGAGGAGCGCCGCACGGACTGGGGTTACTCCAAGCCGGTGGTGGCGCTTGACATGTCGTGGAACATGGCCTTCGTGGTCGTCTCGGCCGCGATGCTCGCATGCACCATTAGCGAGCGGCCGAACTCGCCGATCCGCGTGTGGATCATCGGGTACGCGCTGCAGTGTCTTGTGCATGTGGTGCTCGTCTGGGTCGAGTACCGGCGTCGTAGCCGGATGGACTCGCGCCGCGGCCAGGGGACGCAGGACGTGGAGAGCCAGGCCGGCAGTGACAACGATGAGGGCGGCAACGACAGCGACAGCGACGTGGTGGATGGGAGCTCTGGCAATTCGTCTCGCTCCAGGTTCACAAAACGATGTGAATCATTAAATACTGGGGTTTCATTCCTTTGGTGGATAGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTGCAAGATGCCCCACGATTGTATTGGTTATCTGTTGTCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTCTTGGCGTGCTTGATTGGTATTGCTCTTTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCGGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGCATACTTCCAAAATACAGATTTCGAATACTAAGCAATGAGGATAAGCCCAGTGGCGGAGCTGGATCAATGGTTCCCATAGAAACCAGCAGCGCTTACTTGGCAAATGAACGATTGCTTTTACCAGAGGATGCGGAATGCTGTATTTGCCTCTGTTCATACGAAGATGGAGCAGAGCTCCATGCTCTTCCTTGCAACCATCATTTTCATTCTTCATGCATAGTGAAATGGCTGAAGATGAATGCTACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGAAACGAACAGGTTTGA 1062 0.5433 MSSQIPAAEAPLLRNRHDAARAPALALLLGRAGRRGPSMLVRETAARELEERRTDWGYSKPVVALDMSWNMAFVVVSAAMLACTISERPNSPIRVWIIGYALQCLVHVVLVWVEYRRRSRMDSRRGQGTQDVESQAGSDNDEGGNDSDSDVVDGSSGNSSRSRFTKRCESLNTGVSFLWWIVGFYWVVSGGDILLQDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRILSNEDKPSGGAGSMVPIETSSAYLANERLLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium137g00002 353 SMART ring_2 302 342 IPR001841 -
Vium137g00002 353 Pfam Ring finger domain 301 343 IPR001841 -
Vium137g00002 353 MobiDBLite consensus disorder prediction 128 142 - -
Vium137g00002 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 348 IPR013083 -
Vium137g00002 353 CDD RING-H2_PA-TM-RING 301 343 - -
Vium137g00002 353 MobiDBLite consensus disorder prediction 149 163 - -
Vium137g00002 353 FunFam E3 ubiquitin protein ligase RIE1 282 350 - -
Vium137g00002 353 SUPERFAMILY RING/U-box 290 347 - -
Vium137g00002 353 MobiDBLite consensus disorder prediction 124 163 - -
Vium137g00002 353 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
Vium137g00002 353 PANTHER TARGET OF ERK KINASE MPK-1 32 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium137g00002 Vium-Chr137 33234 45131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium137g00002 8 352 C3H Transcription Factor Family AT1G68070 67.723 3.80e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium137g00002 - K13148 gmx:100816519 546.584