Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium137g00001 ATGCTTCCCCGGAAAATGGGGTTCCGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGAAAAATTCAAGTTTTCCCTAAAGAGCTTCCTCTGTCGTTGGAGCTTGTCACGCAAGCAATTGAGGGGTGCAGGCAGCAATTGTCTGGAACGGTTACGGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCAACGGATGAAGGACCTGTTTTTGAGGAGTTCATTCCTATTAAGAAAGGAGCATCTCAAGATTCTGTTGAAGAAGAGGAAGAAGAAGAAAATGAAGATGAAGATGAGCAACATTCTCATCAGCACAGGAAAACCACTTCTGATAAAAAGAAATCAGATTGGCTTAGATCCGTTCAGTTGTGGAATTCCAATCCCCCTCCTACCAAAGAGGATGTGCCTAGAAAAGCAAATGTTGTTGAAGTAAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGCTATAGTTAACGGAAAGGCTGATAACTATGCATCAGCAATCGGTAAAACACCGTCTTCACCACCAGTTCCTGCTACAAGTTCCACAGGACCAATTACAATAGACAGCAGAAAAGAGGAGAAAGGACAGACTCAGAGAAAGCAACGACGATGTTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCCCTTCAGCAACTTGGTGGTGCAGATTCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGCCACTTGCAGAAATTTCGTCTGCACACTAGAAGAAGTCCCATAATACACAACAACGGAAATCCACAAGCAGCACCTTTGTTTCTTGTGGGGAAAATTTTTGTGCAGCCCCCAGAATATGGTGCAGTAGCTACCTCAACAGCTTCTGGAGGAGAATTGACCACAGTTACTGCTCCAACTGGAATATATGCACCTTTGGCTGCACATCCTCCACTTGTCACAAACACATCAATAATGAACCATTCACGTTCACAAGAAAGGCCTAATAATAATAATAATAGTGCTCAATCAAACTCACCTGCCTCATCATCTTCCACACACACAATCACAACTACTTAA 1107 0.4381 MLPRKMGFREYIEALEEERRKIQVFPKELPLSLELVTQAIEGCRQQLSGTVTEYNLNGQSECSEQTSTDEGPVFEEFIPIKKGASQDSVEEEEEEENEDEDEQHSHQHRKTTSDKKKSDWLRSVQLWNSNPPPTKEDVPRKANVVEVKRNGGAFQPFQREEKSAIVNGKADNYASAIGKTPSSPPVPATSSTGPITIDSRKEEKGQTQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNGNPQAAPLFLVGKIFVQPPEYGAVATSTASGGELTTVTAPTGIYAPLAAHPPLVTNTSIMNHSRSQERPNNNNNSAQSNSPASSSSTHTITTT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium137g00001 368 MobiDBLite consensus disorder prediction 176 196 - -
Vium137g00001 368 MobiDBLite consensus disorder prediction 175 214 - -
Vium137g00001 368 Gene3D - 209 267 - -
Vium137g00001 368 MobiDBLite consensus disorder prediction 338 368 - -
Vium137g00001 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Vium137g00001 368 MobiDBLite consensus disorder prediction 197 214 - -
Vium137g00001 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Vium137g00001 368 MobiDBLite consensus disorder prediction 61 118 - -
Vium137g00001 368 Pfam Myb-like DNA-binding domain 212 261 IPR001005 -
Vium137g00001 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 348 IPR044787 GO:0003700|GO:0006355
Vium137g00001 368 FunFam Myb family transcription factor 209 267 - -
Vium137g00001 368 MobiDBLite consensus disorder prediction 101 118 - -
Vium137g00001 368 SUPERFAMILY Homeodomain-like 207 268 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium137g00001 Vium-Chr137 13453 15972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium137g00001 10 324 G2-like Transcription Factor Family AT1G68670 48.494 2.84e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium137g00001 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium137g00001 - - gmx:100819750 536.569