Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13798g00003 ATGAAAGACGAGTCAACTGGGCTTATCATCGGGATTTCCATAGGTGTGGTGATTGGAGTTGCTTTGGCAATTTCTGCGTTGTTCTGTCTCAGATATCATAGGAAACGGTCACAGATAGGCAATAGCAGTTCCCGGAGAGCAGCTGCCATACCCATCCGCCAAAATGGTTTTGATTCATGCACTATTCTATCAGACTCAACCTTGGGTCCAGAATCACCTGTGAGGTCTGGACGAAATGGCACATCCTTCTGGCTTGAGGGCTTCAAGAAGAGTAGCAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCACAGATGTCTACTGGGGAGACTGTTGCAGTTAAAGTTCTCGCTACTAATTCTAAGCAAGGGGAGAAAGAATTTCATACAGAGGTTATGCTGCTGGGAAGGTTACATCATAGGAATCTGGTGAATTTGGTTGGGTATTGTGCGGAAAAGGGGCAACACATGCTTATATATGTGTACATGAGTAAAGGCTGCTTGGCTTCCCACTTGTACAGTGAAGAGAATGGTGCTCTGGGTTGGGAATTGAGAGTTCATATAGCTTTAGACGTAGCAAGAGGAATAGAGTATCTTCATGATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTTGGACTCTCGAGAGAAGAGATGGTGGATAAACAAGCTGCAATTCGGGGTACCTTTGGCTATCTTGATCCTGAGTATATATCTTCAGGAACATTCACCAAAAAAAGTGATGTATACAGTTTTGGGGTTTTGCTCTTTGAACTTATAGCAGGCAGAAATCCTCAGCAAGGTCTAATGGAATATGTTGAGCTTGCAGCAATGAACAGTGAGGGGAAAGTTGGTTGGGAGGAGATAGTTGATTCTAGGCTTGAGGGAAAATGTGAGTTTGAAGAGGTGAATGAAGTGGCAGCCCTTGCCTACAAATGCATCAACCGCGTCCCAAAGAAACGGCCTTCCATGAGGGACATTGTGCAAGTTTTGACACGAATACTCAAGTCAAGGCACCAAAGGAATCATCATCATCACAAGAAGTCACTCTCAGCCGCAGGTGATGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGACTTCTCTCACTCACCACCACACAAGAGAAGAATCTATAGACAGCGCAGCTGACATGTATGATTTGTAG 1302 0.4393 MKDESTGLIIGISIGVVIGVALAISALFCLRYHRKRSQIGNSSSRRAAAIPIRQNGFDSCTILSDSTLGPESPVRSGRNGTSFWLEGFKKSSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLIYVYMSKGCLASHLYSEENGALGWELRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKQAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNSEGKVGWEEIVDSRLEGKCEFEEVNEVAALAYKCINRVPKKRPSMRDIVQVLTRILKSRHQRNHHHHKKSLSAAGDEVSIDVDQLETKTSLTHHHTREESIDSAADMYDL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13798g00003 433 SUPERFAMILY Protein kinase-like (PK-like) 102 390 IPR011009 -
Vium13798g00003 433 MobiDBLite consensus disorder prediction 412 433 - -
Vium13798g00003 433 PANTHER OS01G0750732 PROTEIN 5 401 - -
Vium13798g00003 433 SMART serkin_6 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13798g00003 433 CDD STKc_IRAK 119 378 - -
Vium13798g00003 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Vium13798g00003 433 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13798g00003 433 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 188 - -
Vium13798g00003 433 Gene3D Phosphorylase Kinase; domain 1 83 188 - -
Vium13798g00003 433 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 398 - -
Vium13798g00003 433 Pfam Protein tyrosine and serine/threonine kinase 115 375 IPR001245 GO:0004672|GO:0006468
Vium13798g00003 433 Gene3D Transferase(Phosphotransferase) domain 1 189 403 - -
Vium13798g00003 433 MobiDBLite consensus disorder prediction 412 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13798g00003 Vium-Chr13798 21324 25196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13798g00003 24 375 Glycoside Hydrolase AT3G07070 38.275 1.05e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vium13798g00003 PK_Tyr_Ser-Thr 2.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13798g00003 - - gmx:100799586 775.393