Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13796g00001 ATGACTACAACAACACCGAATCACACAGTAACCGTATCTGGGTGGGCAGCACATGATACTTCCGGCAAGATTACCCCCTACACCTTCAAAAGAAGGGAGAACGGTGTTAACGATGTTACCATAAAGATCTTGTACTGTGGAATCTGCCACACGGACCTCCACTATGCTAAAGATGAATGGGGCATCACCAAGTACCCTGTGGTACCTGGGCACGAAATCATTGGGGTGATAACCAAGACAGGAAGCGATGTGCAGGGGTTCAAGGAAGGAGACAGAGTGGGTGTGGGGTGTATGGCAGCTTCGTGTTTGGATTGTGAACACTGCAAGACAGATCAGGAAAACTACTGTGATAAGATGGTGCTTATATACAACGGAATCTTCTGGGAAGGAAGCATCACCTACGGTGGCTACTCCCAGCTCATTATTGCAGATTACAGGTATGTGGTACACATTCCGGAGAGCCTACCGATGGATGCGGCGGCTCCTCTACTGTGCGCCGGAATAACAGTGTTCACTCCTTTGAAAGATCACGATTTGGTGGCAACGCCGGGGAAAAAGATTGGAGTGGTGGGTTTGGGAGGGCTGGGACACTTGGCCGTTAAATTTGGGAAGGCATTTGGGCACCATGTTACCGTCATAAGCACTTCTCCTTCCAAAGAAGCTGAAGCGAAGCAACGTTTGGGTGCTGATGATTTCATAATCAGCTCCAACCCTAAACAATTACAGGATGCAAGGAGAAGCCTCGATTTCATACTGGACACTGTTTCTGGAGACCACCCTCTGTTACCCATCTTGGAATTGCTGAAAATAAACGGCACCTTATTTCTGGTGGGAGCTCCGGACAAGCCACTCCAACTGCCGGCTTTCCCGTTGATTTTTGGAAAGAGAGCAGTAAAAGGTGGCATCATAGGTGGAATAAAAGAGACTCAGGAAATGTTGGATCTGTGTGCGAAGTACAACATAACGAGTGACATTGAGGTAATCACACCAGACAAAATCAACGAGGCTATCGATCGTCTTGCGAAGAATGATGTTCGGTACCGTTTCGTGATTGACATTGGTGCTGCCTCCAGCGTGTAG 1080 0.4815 MTTTTPNHTVTVSGWAAHDTSGKITPYTFKRRENGVNDVTIKILYCGICHTDLHYAKDEWGITKYPVVPGHEIIGVITKTGSDVQGFKEGDRVGVGCMAASCLDCEHCKTDQENYCDKMVLIYNGIFWEGSITYGGYSQLIIADYRYVVHIPESLPMDAAAPLLCAGITVFTPLKDHDLVATPGKKIGVVGLGGLGHLAVKFGKAFGHHVTVISTSPSKEAEAKQRLGADDFIISSNPKQLQDARRSLDFILDTVSGDHPLLPILELLKINGTLFLVGAPDKPLQLPAFPLIFGKRAVKGGIIGGIKETQEMLDLCAKYNITSDIEVITPDKINEAIDRLAKNDVRYRFVIDIGAASSV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13796g00001 359 Gene3D - 15 353 - -
Vium13796g00001 359 CDD CAD1 14 352 IPR047109 GO:0016616
Vium13796g00001 359 Gene3D - 166 323 - -
Vium13796g00001 359 SUPERFAMILY GroES-like 18 177 IPR011032 -
Vium13796g00001 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Vium13796g00001 359 PANTHER ALDEHYDE REDUCTASE 7 354 IPR047109 GO:0016616
Vium13796g00001 359 Pfam Alcohol dehydrogenase GroES-like domain 37 150 IPR013154 -
Vium13796g00001 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
Vium13796g00001 359 FunFam probable cinnamyl alcohol dehydrogenase 15 173 - -
Vium13796g00001 359 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Vium13796g00001 359 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
Vium13796g00001 359 FunFam Cinnamyl alcohol dehydrogenase 166 323 - -
Vium13796g00001 359 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13796g00001 Vium-Chr13796 1670 3526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13796g00001 14 356 Monolignol Biosynthesis Gene Families AT2G21730 56.686 2.34e-143 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13796g00001 K00083 - gmx:100820588 647.891