Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13789g00002 ATGACGATTGGTAGTTTAGCACCCAAGACAGAGAAAAAGAGATCAAGTAAAAACAAGGCAGTGGTTAATGAAAATGCACCCTTGTTGCCAAAAAGTCAGGTTCAGGGGAGTGATGCTGGGTTTGATGATTTCAATGGAGCTTCATTTTCTGGGGCTGTTTTTAACCTATCTACCACAATTATTGGTGCTGGAATCATGGCGTTGCCTGCAACCTTGAAACAGTTGGGGATGGTGCCTGGCCTTATTGCTATCATCATCATGGCCTTGTTGACAGAGAAGTCAATTGAGCTTTTGATTAGGTTTACCCGAGCAGGGAAGTCTGTTTCTTATGCTGGTCTCATGGGGGATTCCTTTGGGAAGTATGGAAAAGCTCTGGTGCAGATATGTGTCATAATCAATAACATTGGCGTGCTGATTGTTTACATGATTATAATTGGTGATGTGCTCTCTGGAACATCTTCAGGTGGAGATCATCACTACGGTATCCTTGAAGGATGGTTTGGTGTGCGCTGGTGGACAGGACGGACATTTGTTGTTCTTATTACAACACTCGCCATATTTGCACCCCTTGCGAGTTTTAAACGAATTGGTAAGTGTTGTTCATTTATTTAA 612 0.4265 MTIGSLAPKTEKKRSSKNKAVVNENAPLLPKSQVQGSDAGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLKQLGMVPGLIAIIIMALLTEKSIELLIRFTRAGKSVSYAGLMGDSFGKYGKALVQICVIINNIGVLIVYMIIIGDVLSGTSSGGDHHYGILEGWFGVRWWTGRTFVVLITTLAIFAPLASFKRIGKCCSFI 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13789g00002 203 PANTHER AMINO ACID TRANSPORTER 45 198 - -
Vium13789g00002 203 MobiDBLite consensus disorder prediction 1 22 - -
Vium13789g00002 203 Pfam Transmembrane amino acid transporter protein 47 196 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13789g00002 Vium-Chr13789 25 1468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13789g00002 3 196 Amino Acid or Auxin Permease AAAP Family AT3G30390 59.278 2.32e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13789g00002 K14207 - vum:124822180 400.593