Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1376g00013 ATGTCTACCGCAGCGCAACCCAAAGTTAAGAAAACAGCTGCGACCACCAAGAAACACCTCTCTCACCCTACCTTTGCCGTGATGATATCGGAGGCTATTACGAGTCTGAAGGAGAGAACTGGTTCAAGCCAATATGCGATAACGAAGTTCATCGAAGGGAAGCACAAGGAGTTGCCACCAACCTACAAGAAACTTGTACTCATTCAGCTCAAGAAATCTGTTGCTGCTGGCACGCTTGTCAAGGTTAAAAACTCCTTTAAACTTGCACCCACTAAACCTGTCTCTGCTCCTTCTGCTAAGGTTGGTGTTGCTGCTCCTAAAAAGCCCAAGTCTGTTACCAAGACCACCACCAAGGCTGCTTCTAAGCCCAAGCCTGCTCCTAAGAAGAAGCCCGTGTCTAAGACCAAGGCTAAGACTGCTGCTGTAGCTGTCAAGCCCAAGGCTAAGCCTGCCAAGAAGGTTGTTGCCAAGTCTGCCAAGAAGACTCCCGTAAAAGCGGTGAAGAAGCCCAAGAGTGTGGTGAAGAAACCCAAGAGCGTGAAATCTCCAGCCAAGAAGACCAAGAAGTGA 570 0.4895 MSTAAQPKVKKTAATTKKHLSHPTFAVMISEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGTLVKVKNSFKLAPTKPVSAPSAKVGVAAPKKPKSVTKTTTKAASKPKPAPKKKPVSKTKAKTAAVAVKPKAKPAKKVVAKSAKKTPVKAVKKPKSVVKKPKSVKSPAKKTKK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1376g00013 189 PRINTS Histone H5 signature 112 126 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium1376g00013 189 PRINTS Histone H5 signature 145 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium1376g00013 189 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium1376g00013 189 PRINTS Histone H5 signature 167 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium1376g00013 189 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vium1376g00013 189 PANTHER HISTONE H1 6 179 - -
Vium1376g00013 189 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium1376g00013 189 SUPERFAMILY "Winged helix" DNA-binding domain 19 97 IPR036390 -
Vium1376g00013 189 CDD H15 21 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium1376g00013 189 MobiDBLite consensus disorder prediction 92 189 - -
Vium1376g00013 189 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium1376g00013 189 Pfam linker histone H1 and H5 family 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium1376g00013 189 MobiDBLite consensus disorder prediction 150 189 - -
Vium1376g00013 189 Gene3D - 17 94 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1376g00013 Vium-Chr1376 108897 109806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1376g00013 23 144 Single Myb Histone (SMH) Gene Family AT1G72740 30.081 2.76e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1376g00013 K11275 - gmx:100810590 149.828