LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1376g00011	ATGCACATCCGCGCGAGTCTCTTGCTGCTCTTTTGTTTCCCCGTCTTGTTAAACGCCGCATCCTCCTCCGACAAAGGTGGCAGCGATTCCTTGATGTTGAGCTGTGGGTTGGACAAAAGCGGTGCCAAAGACAGCGACGGTAGACAATGGAGCTCCGATGAGAAGTACCTCTCAGAGAATAACACCCTCACGTTCAAAGCCTCTTTCCAAGACCCTTCGCTTTTGTCCGAGGTTCCATATATGACTGCACGAATTTTCACCAGCAAAGCATCCTACAAGTTCCCCATCCAAGGTGACAAACGTTACTGGCTCAGGCTCCATTTCTACCCCTCCTCTTACAACACCTTCGACCCCGTTGACTCTTATTTCTCCGTCACCGCAAACGGCCTCAAGCTTCTTTCCAACTTCAGCGCCTCCGTCACGTGCCAAGCCCTCTCACAGGCCTACCTCGACCGAGAGTATTCCCTTGCGCCTTTGGATTCCGACACTCTCACCGTCACCTTCACGCCCTCTGACAAGCACGATAAAGCTTTTGCTTTTATTAATGGGATTCAGCTCATCGAAATGCCTGAGTTGTTTGACGAGGCTCCCTTGTTGGGTTTCGATGACCAAACCATGGATACCAAGACTATGCATTTTCAGACCATGTTCAGGTTAAACGTTGGAGGACAATACATCGCTCCAAATAATGATTCTGGTCTATCCAGAACGTGGTACGATGATACGCCTTATATTTATGGTTCTGCCACTGGTGTCACCAACCAAGCTACCAAGGAAGAAAAAATCGACTACAAAACTCAGCCAGAGTCCATTGCTCCTGTCGATATCTACTCCACTTCCCGATCCATGGGAACCAATAAGGATGTCAACATGGGCTACAATCTCACATGGATATTCCAAGTTGACCCGGCTTCTATGTATCTTACCCGGTTGCATTTCTGCGAATATCACTATTCCAAAGTAAATCAGATTGTTTTCAAAATCTACATCAACAACCGCACAGCGGAGACTGCTGCTGATGTGATTGGGTGGTCAGGAGGTCAAGGAGTGCCAACGTACAAGGATTATGTATTATATGTGAAAGATCAACCAGGTGATGATCAACTCTGGCTTGCTTTGCACCCTGCAAATGAATCAAAGCCAGAATTTTATGACGCGTTACTCAATGGGGTGGAGGTGTTCAAGCTCAATGACACAGACCTGTCTGGTCCCAATCCCCAGCCTTCTGAAATGCTGGTTCAACATGAACACAAGTCAAATACTTTCCATAGAAAACAAGAGACTAGTAGGACTTTTGTTATAAGCACTGCTGGGGGTGCTGCAGGTTTTGCCTTGGTGGCTGCAATAGTTGTTGTTGCTCGTCGGCAAAAGAAAAAGAGAGCTCCGGGGACGTACACTGGCACGTCCAGCTGGCTGCCTCTTTATGGCCATTCGCACACAGCAGGCACCAAATCCTCAGGATCAGGGAAGAGTGTGGGCCATTCCAACCTAACAGCCATGACTCAAGGATTGTGCCGCTATTTCTCCTTACATGATATGAAGCAAGCAACCAAGAATTTCGATGAATCTAACGTGATAGGGGTGGGAGGGTTTGGAAAGGTTTATAAGGGTGTTATTGATAATGGATTCAAAGTTGCAATCAAGAGATCGAACCCGCAATCAGAACAAGGAGTGAACGAGTTTCAGACAGAGATTGAGATGCTGTCCAAGTTGAGACACAAGCATTTGGTGTCCTTGATTGGTTTTTGCGAGGAGGGTGATGAGATGTGTCTGGTTTATGACTACATGGCTCTTGGCACCATGAGGGAACACCTTTACAAGGGAAACAAGCCATTAGACCTGCTAACATGGAAGCAGAGGTTGGAGATCTGCATAGGAGCTGCAAGAGGCCTTCACTACCTTCACACTGGAGCAAAATACACCATCATTCACAGAGATGTCAAAACAACCAACATTCTCCTTGATGAAAACTGGGTTGCCAAGGTTTCAGATTTTGGACTGTCCAAAACAGGTCCAAACATGAATCAAGGTCATATTAGTACAGTGGTGAAGGGTAGCTTTGGATACTTGGATCCCGAATATTTCAGGAGGCAACAGTTGACTGAGAAGTCTGATGTGTACTCGTTTGGGGTGGTGCTGTTTGAGGCCCTTTGTGCAAGGCCTGCTCTCAACCCTAACCTTCCGAAGGAACAGGTAAGCCTTGCGGAATGGGCATTGTACAACAAAAGAAAAGGAACCCTTGAGGACATCATTGACCCCAGCATCAAAGGGAAGATGAACCCTGAAAGTTTGACCAAGTTTGCTGATACAGCTGAGAAGTGTGTATCTGATAATGGATTCGAACGACCCTCCATGAATGACTTGTTGTGGAATCTCGAATTCGCTCTCAACTTGGAAAAAAACACAGATGGTTCAACTGCTCCAGGTCGGGACGAAGGTGAGTTCTCAGAAGTAAGCTTGGAAGACAACAGGGCAGCTCATTACAAAAACCTCAGCCTTGAAAGCGAGAAAGGGCTTAGCCAAGACTCCGGTAATGGTAGCTCTGCTGTCATCTTCTCTCAAATTGCCAATCCAACAGGACGATGA	2586	0.4691	MHIRASLLLLFCFPVLLNAASSSDKGGSDSLMLSCGLDKSGAKDSDGRQWSSDEKYLSENNTLTFKASFQDPSLLSEVPYMTARIFTSKASYKFPIQGDKRYWLRLHFYPSSYNTFDPVDSYFSVTANGLKLLSNFSASVTCQALSQAYLDREYSLAPLDSDTLTVTFTPSDKHDKAFAFINGIQLIEMPELFDEAPLLGFDDQTMDTKTMHFQTMFRLNVGGQYIAPNNDSGLSRTWYDDTPYIYGSATGVTNQATKEEKIDYKTQPESIAPVDIYSTSRSMGTNKDVNMGYNLTWIFQVDPASMYLTRLHFCEYHYSKVNQIVFKIYINNRTAETAADVIGWSGGQGVPTYKDYVLYVKDQPGDDQLWLALHPANESKPEFYDALLNGVEVFKLNDTDLSGPNPQPSEMLVQHEHKSNTFHRKQETSRTFVISTAGGAAGFALVAAIVVVARRQKKKRAPGTYTGTSSWLPLYGHSHTAGTKSSGSGKSVGHSNLTAMTQGLCRYFSLHDMKQATKNFDESNVIGVGGFGKVYKGVIDNGFKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEGDEMCLVYDYMALGTMREHLYKGNKPLDLLTWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNQGHISTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPNLPKEQVSLAEWALYNKRKGTLEDIIDPSIKGKMNPESLTKFADTAEKCVSDNGFERPSMNDLLWNLEFALNLEKNTDGSTAPGRDEGEFSEVSLEDNRAAHYKNLSLESEKGLSQDSGNGSSAVIFSQIANPTGR	861

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1376g00011	861	Gene3D	Phosphorylase Kinase; domain 1	482	595	-	-
	Vium1376g00011	861	Gene3D	Transferase(Phosphotransferase) domain 1	596	808	-	-
	Vium1376g00011	861	MobiDBLite	consensus disorder prediction	836	861	-	-
	Vium1376g00011	861	FunFam	receptor-like protein kinase FERONIA	483	595	-	-
	Vium1376g00011	861	SMART	serkin_6	520	795	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1376g00011	861	Pfam	Protein tyrosine and serine/threonine kinase	524	789	IPR001245	GO:0004672\|GO:0006468
	Vium1376g00011	861	ProSitePatterns	Protein kinases ATP-binding region signature.	526	548	IPR017441	GO:0005524
	Vium1376g00011	861	FunFam	FERONIA receptor-like kinase	30	190	-	-
	Vium1376g00011	861	ProSiteProfiles	Protein kinase domain profile.	520	795	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1376g00011	861	FunFam	FERONIA receptor-like kinase	211	397	-	-
	Vium1376g00011	861	PANTHER	OS07G0166700 PROTEIN	504	799	IPR045272	GO:0004714\|GO:0006468
	Vium1376g00011	861	Gene3D	-	31	190	-	-
	Vium1376g00011	861	Gene3D	-	212	397	-	-
	Vium1376g00011	861	SUPERFAMILY	Protein kinase-like (PK-like)	497	795	IPR011009	-
	Vium1376g00011	861	Pfam	Malectin-like domain	33	395	IPR024788	-
	Vium1376g00011	861	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	642	654	IPR008271	GO:0004672\|GO:0006468
	Vium1376g00011	861	CDD	STKc_IRAK	526	793	-	-
	Vium1376g00011	861	FunFam	Receptor-like protein kinase FERONIA	596	808	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1376g00011	Vium-Chr1376	86150	89156	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1376g00011	21	861	Receptor kinase-like Gene Family	AT3G51550	51.587	0.0	851

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vium1376g00011		Malectin_like	9.4e-40	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1376g00011	-		-	gmx:100791236	1371.3