Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1376g00007 ATGGTGTCGAGCCAGGTGGTGAAAGTGAAGAGAGATACGCTACGACCATGCATGACATGCCCTCTCTGCCATAACTTCTACAAAGATGCCACCACCATCTCTCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATATGATAAACTATCGGATGAGGAGATGGATTGCTGTCCTGTGTGCAAGATTGATTTAGGCTGCCTTCCGGTTGAAAAGCTCAGGCCAGACCATAATTTGCAAGATATAAGGGCAAAAGTATTCCCGTTTAAGAGAAAAAAGATCAAGGCCCAGGAAGTTTTGTCTTCAATATCATTGCCAACCAAAAGGAAAGAAAGATCACTTTCATCATTGGTAGTCAGTGCCCCCAAAGTTTCAATGCAACCCGGCTTTACAGGAAAGAGAACTAAAACCAGTACAAGAAAGGCTGCTGCTGCTTTACGTGGATGCGGTTTTCTTCTTGAATCCATAAAGAAGGAAGAAACAAACGGTGAAGATAATACGGATCCTTCAATGGCCGAGCCTTCTAAAAAGCATAAGCCTAATGCAGATAAAGAGAACAGTGTGGAACATGCAGAAGGGAAGGTTGATCTCTGGACACCCCTGAACTGTCTTGTTGAAGCTGCCAACCGAACAAAGTCCTCCAGGTCAAATTCACAAGCAATTCCTCTTGCCAAATTAGAGTCCCCGGTTACTCCTCATGGTGGACAAAATATACCTGAAATTACAACCAAAACAGACCTACCAGCTTCTGTCCACAGTGAACTAAACATTCCAAAATCCAAAAATAAGGATACTGGACACAAAACAATATTTGGGGATGACAAGGATGCAAACAACTTGCCTTCAGGACCAGTGAAGAGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCAGCATCTGAGATGTCTTCCTCATCCCCAGCTCCACTAAATGCAACAGGGAGCAAGTGCAACAGAAAAAATAGTCCTATCTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATATTCCCTTGCCACAGATCTCAGCATGTTATTTAAGAATAAAGGATGGTACTGTGCCCGTCTCATTTATTCAAAAGTACCTCGTGAAGAAACTTAATCTTTCCAGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAAGCAGTGCTTCCATCATTACAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCCTCAACCTCGAAAAGGATACCAGCATCAGTGGGGTCCTCAGCCAAAGATTTTGTGATGGTTTTATCGTATTGTCGAAAGACATTGCCCCCTTGA 1299 0.4365 MVSSQVVKVKRDTLRPCMTCPLCHNFYKDATTISLCLHTFCRKCIYDKLSDEEMDCCPVCKIDLGCLPVEKLRPDHNLQDIRAKVFPFKRKKIKAQEVLSSISLPTKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAAALRGCGFLLESIKKEETNGEDNTDPSMAEPSKKHKPNADKENSVEHAEGKVDLWTPLNCLVEAANRTKSSRSNSQAIPLAKLESPVTPHGGQNIPEITTKTDLPASVHSELNIPKSKNKDTGHKTIFGDDKDANNLPSGPVKRRRLRPAGQKRVAASEMSSSSPAPLNATGSKCNRKNSPIWFSLVASEDQKGDIPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLSSEAEVEIMCRGQAVLPSLQLHNLVDLWFRTASTSKRIPASVGSSAKDFVMVLSYCRKTLPP 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1376g00007 432 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Vium1376g00007 432 MobiDBLite consensus disorder prediction 298 315 - -
Vium1376g00007 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Vium1376g00007 432 Gene3D - 309 407 - -
Vium1376g00007 432 MobiDBLite consensus disorder prediction 255 315 - -
Vium1376g00007 432 MobiDBLite consensus disorder prediction 156 188 - -
Vium1376g00007 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Vium1376g00007 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 430 IPR044807 GO:0004842
Vium1376g00007 432 SUPERFAMILY RING/U-box 14 84 - -
Vium1376g00007 432 MobiDBLite consensus disorder prediction 256 273 - -
Vium1376g00007 432 SMART ring_2 20 60 IPR001841 -
Vium1376g00007 432 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1376g00007 Vium-Chr1376 60322 65572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1376g00007 1 351 C3H Transcription Factor Family AT2G30580 43.666 3.16e-83 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1376g00007 K16277 - gmx:100783999 761.525