Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1376g00006 ATGGTGTCGAGCCAGGTGGTGAAAGTGAAGAGAGATACGCTACGACCATGCATGACATGCCCTCTCTGCCATAACTTCTACAAAGATGCCACCACCATCTCTCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATATGATAAACTATCGGATGAGGAGATGGATTGCTGTCCTGTGTGCAAGATTGATTTAGGCTGCCTTCCGGTTGAAAAGCTCAGGCCAGACCATAATTTGCAAGATATAAGGGCAAAAGTATTCCCGTTTAAGAGAAAAAAGATCAAGGCCCAGGAAGTTTTGTCTTCAATATCATTGCCAACCAAAAGGAAAGAAAGATCACTTTCATCATTGGTAGTCAGTGCCCCCAAAGTTTCAATGCAACCCGGCTTTACAGGAAAGAGAACTAAAACCAGTACAAGAAAGGCTGCTGCTGCTTTACGTGGATGCGGTTTTCTTCTTGAATCCATAAAGAAGGAAGAAACAAACGGTGAAGATAATACGGATCCTTCAATGGCCGAGCCTTCTAAAAAGCATAAGCCTAATGCAGATAAAGAGAACAGTGTGGAACATGCAGAAGGGAAGGTTGATCTCTGGACACCCCTGAACTGTCTTGTTGAAGCTGCCAACCGAACAAAGTCCTCCAGTGAACTAAACATTCCAAAATCCAAAAATAAGGATACTGGACACAAAACAATATTTGGGGATGACAAGGATGCAAACAACTTGCCTTCAGGACCAGTGAAGAGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCAGCATCTGAGATGTCTTCCTCATCCCCAGCTCCACTAAATGCAACAGGGAGCAAGTGCAACAGAAAAAATAGTCCTATCTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATATTCCCTTGCCACAGATCTCAGCATGTTATTTAAGAATAAAGGATGGTACTGTGCCCGTCTCATTTATTCAAAAGTACCTCGTGAAGAAACTTAATCTTTCCAGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAAGCAGTGCTTCCATCATTACAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCCTCAACCTCGAAAAGGATACCAGCATCAGTGGGGTCCTCAGCCAAAGATTTTGTGATGGTTTTATCGTATTGTCGAAAGACATTGCCCCCTTGA 1185 0.4371 MVSSQVVKVKRDTLRPCMTCPLCHNFYKDATTISLCLHTFCRKCIYDKLSDEEMDCCPVCKIDLGCLPVEKLRPDHNLQDIRAKVFPFKRKKIKAQEVLSSISLPTKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAAALRGCGFLLESIKKEETNGEDNTDPSMAEPSKKHKPNADKENSVEHAEGKVDLWTPLNCLVEAANRTKSSSELNIPKSKNKDTGHKTIFGDDKDANNLPSGPVKRRRLRPAGQKRVAASEMSSSSPAPLNATGSKCNRKNSPIWFSLVASEDQKGDIPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLSSEAEVEIMCRGQAVLPSLQLHNLVDLWFRTASTSKRIPASVGSSAKDFVMVLSYCRKTLPP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1376g00006 394 MobiDBLite consensus disorder prediction 156 191 - -
Vium1376g00006 394 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 392 IPR044807 GO:0004842
Vium1376g00006 394 SUPERFAMILY RING/U-box 14 84 - -
Vium1376g00006 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 111 IPR013083 -
Vium1376g00006 394 MobiDBLite consensus disorder prediction 221 235 - -
Vium1376g00006 394 SMART ring_2 20 60 IPR001841 -
Vium1376g00006 394 MobiDBLite consensus disorder prediction 209 277 - -
Vium1376g00006 394 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Vium1376g00006 394 MobiDBLite consensus disorder prediction 156 192 - -
Vium1376g00006 394 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Vium1376g00006 394 Gene3D - 270 370 - -
Vium1376g00006 394 MobiDBLite consensus disorder prediction 260 277 - -
Vium1376g00006 394 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1376g00006 Vium-Chr1376 60317 65572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1376g00006 1 313 C3H Transcription Factor Family AT2G30580 46.784 2.87e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1376g00006 K16277 - gmx:100783999 684.485